RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	OR13C8	Q8NGS7	320 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	OR52E5	Q8NH55	327 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	SECTM1	Q8WVN6	248 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	TCTEX1D2	Q8WW35	142 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	ARPC1A	Q92747	370 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	LSM10	Q969L4	123 aa	Known RBP	4	□□□□□ -1.77
HDAC6-223	ENST00000480525	MRGPRF	Q96AM1	343 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	USMG5	Q96IX5	58 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	TMEM56	Q96MV1	263 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	DUX5	Q96PT3	197 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	OR4F4	Q96R69	305 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	GPR61	Q9BZJ8	451 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4	□□□□□ -1.77
HDAC6-223	ENST00000480525	TMEM222	Q9H0R3	208 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	PALMD	Q9NP74	551 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	CCL28	Q9NRJ3	127 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	TMEM14B	Q9NUH8	114 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	METTL1	Q9UBP6	276 aa	Known RBP	4	□□□□□ -1.77
HDAC6-223	ENST00000480525	FOXA2	Q9Y261	457 aa	Predicted RBP	4	□□□□□ -1.77
HDAC6-223	ENST00000480525	TMEM56-RWDD3	S4R434	201 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	SORL1	Q92673	2214 aa		4	□□□□□ -1.77
HDAC6-223	ENST00000480525	NOTCH1	P46531	2555 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	TRBV9	A0A0B4J1U6	114 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	IGHV3-72	A0A0B4J1Y9	119 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	TRAV41	A0A0B4J266	112 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525		A0A0B4J2A0	478 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525		A0A0G2JLM5	398 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FAM223B	A6NKX1	122 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	SRRM4	A7MD48	611 aa	Known RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	ADARB2-AS1	A8MUL3	147 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	SLC25A17	O43808	307 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FCGR3B	O75015	233 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	ACTL6B	O94805	426 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	PMP2	P02689	132 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	SAA1	P0DJI8	122 aa	Predicted RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	VSIG10L2	P0DP72	767 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	ANXA3	P12429	323 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	IL7	P13232	177 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	HIST1H1B	P16401	226 aa	Known RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FCGR2B	P31994	310 aa	Predicted RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	PIGP	P57054	158 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	ERVK-16	P61578	105 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	RPL30	P62888	115 aa	Known RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	RPL8	P62917	257 aa	Known RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	ZNF585B	Q52M93	769 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FBLN7	Q53RD9	439 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	PYDC2	Q56P42	97 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	CXorf66	Q5JRM2	361 aa	Predicted RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	TRIQK	Q629K1	86 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	OR4A47	Q6IF82	309 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	IDO2	Q6ZQW0	420 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	C5orf24	Q7Z6I8	188 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	CENPV	Q7Z7K6	275 aa	Predicted RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FAM223A	Q8IWN6	122 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	OR5AU1	Q8NGC0	362 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	OR51S1	Q8NGJ8	323 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FAM110D	Q8TAY7	271 aa	Predicted RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	C4orf3	Q8WVX3	66 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	SRSF12	Q8WXF0	261 aa	Known RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	SEC22A	Q96IW7	307 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	SDHC	Q99643	169 aa	Predicted RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	HSPB9	Q9BQS6	159 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FBXL15	Q9H469	300 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	C5orf66	Q9H5L9	145 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	ZMAT5	Q9UDW3	170 aa	Known RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	SHPK	Q9UHJ6	478 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	PRND	Q9UKY0	176 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	C14orf166	Q9Y224	244 aa	Known RBP	3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	KCNIP3	Q9Y2W7	256 aa		3.99	□□□□□ -1.77
HDAC6-223	ENST00000480525	FBN3	Q75N90	2809 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	C3orf85	A0A1B0GTC6	90 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	MEIS3P1	A6NDR6	274 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	C15orf61	A6NNL5	157 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	FAM90A26	D6RGX4	464 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525		M0QYG6	137 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	CORT	O00230	105 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	UPK2	O00526	184 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	ATP6V0E1	O15342	81 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	RAMP3	O60896	148 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	NDUFB6	O95139	128 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	CA2	P00918	260 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	RLN1	P04808	185 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	SERPINE2	P07093	398 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	OR9G9	P0C7N8	305 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	EGR2	P11161	476 aa	Predicted RBP	3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	HLA-G	P17693	338 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	CD24	P25063	80 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	PAX6	P26367	422 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	MYCNOS	P40205	109 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	FXYD4	P59646	89 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	RPL23A	P62750	156 aa	Known RBP	3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	NDP	Q00604	133 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	ASAH1	Q13510	395 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	ZNF846	Q147U1	533 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	FXYD3	Q14802	87 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	PLGLA	Q15195	96 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	ARSJ	Q5FYB0	599 aa	Predicted RBP	3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	TCTEX1D4	Q5JR98	221 aa		3.98	□□□□□ -1.77
HDAC6-223	ENST00000480525	PVRIG	Q6DKI7	326 aa		3.98	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms