RNA–Protein interactions for RNA: ENST00000455359.5

HMGXB4-204, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 1,325 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-204ENST00000455359 TRIM16LQ309B1 348 aa11.31□□□□□ -0.6
HMGXB4-204ENST00000455359 AWAT1Q58HT5 328 aa11.31□□□□□ -0.6
HMGXB4-204ENST00000455359 OR4A47Q6IF82 309 aa11.31□□□□□ -0.6
HMGXB4-204ENST00000455359 Q6ZS46 218 aa11.31□□□□□ -0.6
HMGXB4-204ENST00000455359 DMBX1Q8NFW5 382 aa11.31□□□□□ -0.6
HMGXB4-204ENST00000455359 GLYATL2Q8WU03 294 aa11.31□□□□□ -0.6
HMGXB4-204ENST00000455359 TMEM140Q9NV12 185 aa11.31□□□□□ -0.6
HMGXB4-204ENST00000455359 FCN1O00602 326 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 CA2P00918 260 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 KRASP01116 189 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 MDKP21741 143 aaPredicted RBP11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 MECP2P51608 486 aaKnown RBP11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 SUPT4H1P63272 117 aaKnown RBP11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 TMEM267Q0VDI3 215 aaPredicted RBP11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 FAM219AQ8IW50 185 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 VKORC1L1Q8N0U8 176 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 DUSP18Q8NEJ0 188 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 ENKURQ8TC29 256 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 SEC22AQ96IW7 307 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 TMEM68Q96MH6 324 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 HSPB9Q9BQS6 159 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 C20orf85Q9H1P6 137 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 ZNF430Q9H8G1 570 aaPredicted RBP11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 NUBP2Q9Y5Y2 271 aa11.3□□□□□ -0.6
HMGXB4-204ENST00000455359 SH2D7A6NKC9 451 aaPredicted RBP11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 UPK2O00526 184 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 ARPC1BO15143 372 aaKnown RBP11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 CNIH1O95406 144 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 SFT2D2O95562 160 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 IGKV1-39P01597 117 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 IGKV1D-39P04432 117 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 RPL8P62917 257 aaKnown RBP11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 SLC35B1P78383 322 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 TMEM187Q14656 261 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 FXYD3Q14802 87 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 MRGPRG-AS1Q2M3A8 158 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 SP6Q3SY56 376 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 ZNF695Q8IW36 515 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 LGI3Q8N145 548 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 COMMD1Q8N668 190 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 LRTM2Q8N967 370 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 SGMS2Q8NHU3 365 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 ARPC1AQ92747 370 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 RBPMSQ93062 196 aaKnown RBP11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 TPSG1Q9NRR2 321 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 FKBP11Q9NYL4 201 aa11.29□□□□□ -0.6
HMGXB4-204ENST00000455359 A0A0B4J2A0 478 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 DUXBA0A1W2PPF3 345 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 SNAPC5O75971 98 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 OR4E1P0C645 316 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 HLA-GP17693 338 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 VDAC1P21796 283 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 G6PCP35575 357 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 RAB25P57735 213 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 PJVKQ0ZLH3 352 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 DCTN2Q13561 401 aaKnown RBP11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 AKIRIN2Q53H80 203 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 THOC7Q6I9Y2 204 aaKnown RBP11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 C12orf54Q6X4T0 127 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 SSX9Q7RTT3 188 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 H2BFWTQ7Z2G1 175 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 STPG2Q8N412 459 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 WIPF2Q8TF74 440 aaPredicted RBP11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 TAF15Q92804 592 aaKnown RBP eCLIP11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 LSM10Q969L4 123 aaKnown RBP11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 RRNAD1Q96FB5 475 aaKnown RBP11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 CLCC1Q96S66 551 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 SPIN2AQ99865 258 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 SPIN2BQ9BPZ2 258 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 NUDT15Q9NV35 164 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 CACFD1Q9UGQ2 172 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 SHPKQ9UHJ6 478 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 PRNDQ9UKY0 176 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 FLVCR2Q9UPI3 526 aa11.28□□□□□ -0.6
HMGXB4-204ENST00000455359 LINC01548A6NM66 108 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 ATP6V0E1O15342 81 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 PTTG1O95997 202 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 H2AFB2P0C5Z0 115 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 P0C879 139 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 VAMP1P23763 118 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 AKR1C2P52895 323 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 SSBP2P81877 361 aaPredicted RBP11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 PPP1R1AQ13522 171 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 TMEM268Q5VZI3 342 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 NRARPQ7Z6K4 114 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 CENPVQ7Z7K6 275 aaPredicted RBP11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 SELENOHQ8IZQ5 122 aaKnown RBP11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 KLHDC1Q8N7A1 406 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 OR5B3Q8NH48 314 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 WFDC12Q8WWY7 111 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 MDFIQ99750 246 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 SRSF8Q9BRL6 282 aaKnown RBP11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 ZNF747Q9BV97 191 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 PARP11Q9NR21 331 aa11.27□□□□□ -0.61
HMGXB4-204ENST00000455359 TRAV41A0A0B4J266 112 aa11.26□□□□□ -0.61
HMGXB4-204ENST00000455359 C9orf170A2RU37 121 aa11.26□□□□□ -0.61
HMGXB4-204ENST00000455359 PSMB11A5LHX3 300 aa11.26□□□□□ -0.61
HMGXB4-204ENST00000455359 IGKV1-5P01602 117 aa11.26□□□□□ -0.61
HMGXB4-204ENST00000455359 HLA-AP01891 365 aaKnown RBP11.26□□□□□ -0.61
HMGXB4-204ENST00000455359 ANXA7P20073 488 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms