RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 CEACAM8P31997 349 aaPredicted RBP11.4□□□□□ -0.58
USP40-208ENST00000450966 KIR3DS1Q14943 382 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 ZIC1Q15915 447 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 ZNF71Q9NQZ8 489 aaPredicted RBP11.4□□□□□ -0.58
USP40-208ENST00000450966 KLF12Q9Y4X4 402 aa11.4□□□□□ -0.58
USP40-208ENST00000450966 H3BRM9 83 aa11.4□□□□□ -0.59
USP40-208ENST00000450966 OR4C3Q8NH37 302 aa11.4□□□□□ -0.59
USP40-208ENST00000450966 DLX4Q92988 240 aaPredicted RBP11.4□□□□□ -0.59
USP40-208ENST00000450966 TRAV8-1A0A0A6YYK1 113 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 FOXA3P55318 350 aaPredicted RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 PSG3Q16557 428 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 DMRTC2Q8IXT2 367 aaPredicted RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 PRNDQ9UKY0 176 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 C17orf51A8MQB3 221 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 CRXO43186 299 aaPredicted RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 LHX2P50458 406 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 HOXA4Q00056 320 aaPredicted RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 C10orf91Q5T1B1 145 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 SMIM20Q8N5G0 67 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 FAM181BA6NEQ2 426 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 IGHV4-34P06331 123 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 PRSS2P07478 247 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 RAC3P60763 192 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 TNFAIP6P98066 277 aaPredicted RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 PRNTQ86SH4 94 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 LINC00596Q86U02 117 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 GP6Q9HCN6 339 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 IFITM1P13164 125 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 RPL31P62899 125 aaKnown RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 PSG9Q00887 426 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 CIRBPQ14011 172 aaKnown RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 SLC25A40Q8TBP6 338 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 MS4A5Q9H3V2 200 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 ZNF703Q9H7S9 590 aaPredicted RBP11.39□□□□□ -0.59
USP40-208ENST00000450966 EDA2RQ9HAV5 297 aa11.39□□□□□ -0.59
USP40-208ENST00000450966 hADV38S2A0JD32 116 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 PF4V1P10720 104 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 LYZP61626 148 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 ZNF585BQ52M93 769 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 DICER1Q9UPY3 1922 aaKnown RBP11.38□□□□□ -0.59
USP40-208ENST00000450966 CNTRLQ7Z7A1 2325 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 TMSB15BA0A087X1C1 80 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 UCP1P25874 307 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 GCHFRP30047 84 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 TBR1Q16650 682 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 DGAT2L7PQ6IED9 249 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 PRR7Q8TB68 274 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 TMEM171Q8WVE6 324 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 ABHD14AQ9BUJ0 271 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 F8W1H4 67 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 LRTM2Q8N967 370 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 TRBV6-7A0A0A0MS04 114 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 SHISA8B8ZZ34 492 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 K7EP34 96 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 HYPMO75409 117 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 OR51G1Q8NGK1 321 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 SFXN3Q9BWM7 321 aa11.38□□□□□ -0.59
USP40-208ENST00000450966 J3KRW8 73 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 RND2P52198 227 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 FBXW9Q5XUX1 488 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 CXorf67Q86X51 503 aaPredicted RBP11.37□□□□□ -0.59
USP40-208ENST00000450966 CCL17Q92583 94 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 CYTL1Q9NRR1 136 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 IGHV2OR16-5A0A0B4J2B6 119 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 THY1P04216 161 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 C3orf79P0CE67 100 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 CSRP1P21291 193 aaKnown RBP11.37□□□□□ -0.59
USP40-208ENST00000450966 SRSF6Q13247 344 aaKnown RBP11.37□□□□□ -0.59
USP40-208ENST00000450966 TMEM256Q8N2U0 113 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 FAM231BA6NCW3 169 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 C9orf118A6NHY6 69 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 NKX2-8O15522 239 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 WISP3O95389 354 aaPredicted RBP11.37□□□□□ -0.59
USP40-208ENST00000450966 TM4SF19Q96DZ7 209 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 HS3ST3B1Q9Y662 390 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.37□□□□□ -0.59
USP40-208ENST00000450966 LINC01551Q86U37 167 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 SVIPQ8NHG7 77 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 RNASE8Q8TDE3 154 aaKnown RBP11.37□□□□□ -0.59
USP40-208ENST00000450966 SYNGR1O43759 233 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 C2orf83Q53S99 150 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 LYG1Q8N1E2 194 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 RFLNBQ8N5W9 214 aa11.37□□□□□ -0.59
USP40-208ENST00000450966 FER1L6Q2WGJ9 1857 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 NRXN2Q9P2S2 1712 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 IL6RP08887 468 aaPredicted RBP11.36□□□□□ -0.59
USP40-208ENST00000450966 PRTN3P24158 256 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 ASCL5Q7RTU5 278 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 ZNF441Q8N8Z8 693 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 NEUROG3Q9Y4Z2 214 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 HSPE1P61604 102 aaKnown RBP11.36□□□□□ -0.59
USP40-208ENST00000450966 KCNMB1Q16558 191 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 MORN3Q6PF18 240 aaPredicted RBP11.36□□□□□ -0.59
USP40-208ENST00000450966 LINC01555Q8NAE3 123 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 SBF2Q86WG5 1849 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 B5MCH6 92 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 RRHO14718 337 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 MLNRO43193 412 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 C8orf88P0DMB2 117 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 CCL4P13236 92 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms