RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ESRP2Q9H6T0 727 aaKnown RBP12.21□□□□□ -0.45
USP4-203ENST00000415188 RNF7Q9UBF6 113 aa12.21□□□□□ -0.45
USP4-203ENST00000415188 IL19Q9UHD0 177 aa12.21□□□□□ -0.45
USP4-203ENST00000415188 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.21□□□□□ -0.46
USP4-203ENST00000415188 A0A1W2PPH5 198 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 MAP1LC3B2A6NCE7 125 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 CEBPZOSA8MTT3 80 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 OR2C1O95371 312 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 CGB3P0DN86 165 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 CGB7P0DN87 165 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 FOSL1P15407 271 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 HOXB4P17483 251 aaPredicted RBP12.21□□□□□ -0.46
USP4-203ENST00000415188 AKR1C3P42330 323 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 ERVK-16P61578 105 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 Q5PR19 223 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 RBMS3Q6XE24 437 aaKnown RBP12.21□□□□□ -0.46
USP4-203ENST00000415188 Q71RC1 249 aaPredicted RBP12.21□□□□□ -0.46
USP4-203ENST00000415188 C1QL4Q86Z23 238 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 WFDC8Q8IUA0 241 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 RAB39BQ96DA2 213 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 CCL19Q99731 98 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 MAP1LC3BQ9GZQ8 125 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 CALYQ9NYX4 217 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 GNG13Q9P2W3 67 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 CLN8Q9UBY8 286 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 VAX2Q9UIW0 290 aa12.21□□□□□ -0.46
USP4-203ENST00000415188 NIPBLQ6KC79 2804 aaeCLIP12.2□□□□□ -0.46
USP4-203ENST00000415188 PRR14LQ5THK1 2151 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 ROS1P08922 2347 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 CTXND1A0A1B0GTU2 59 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 C17orf112F2Z3M2 114 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 SPRY3O43610 288 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 PLAUP00749 431 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 LOXL3P58215 753 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 SPCS3P61009 180 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 ZNF726P1Q15940 193 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 NCR3LG1Q68D85 454 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 ALKBH2Q6NS38 261 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 FAM53AQ6NSI3 398 aaPredicted RBP12.2□□□□□ -0.46
USP4-203ENST00000415188 ADTRPQ96IZ2 230 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 YPEL4Q96NS1 127 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 DIRC2Q96SL1 478 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 DCTN5Q9BTE1 182 aa12.2□□□□□ -0.46
USP4-203ENST00000415188 IGHV3OR15-7A0A075B7D8 119 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 M0R1X1 148 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 RBMXL2O75526 392 aaKnown RBP12.19□□□□□ -0.46
USP4-203ENST00000415188 FGF7P21781 194 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 CD40P25942 277 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 TNFAIP6P98066 277 aaPredicted RBP12.19□□□□□ -0.46
USP4-203ENST00000415188 HOXA4Q00056 320 aaPredicted RBP12.19□□□□□ -0.46
USP4-203ENST00000415188 STUMQ69YW2 141 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 LCN15Q6UWW0 184 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 ZNF709Q8N972 641 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 PERPQ96FX8 193 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 PLPPR2Q96GM1 343 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 ZNF251Q9BRH9 671 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 GGACTQ9BVM4 153 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 IFI27L2Q9H2X8 130 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 VSIRQ9H7M9 311 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 ZNF665Q9H7R5 613 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 SLC39A9Q9NUM3 307 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 GFOD1Q9NXC2 390 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 TANC2Q9HCD6 1990 aa12.19□□□□□ -0.46
USP4-203ENST00000415188 A0A1W2PPE2 198 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 ARG1P05089 322 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 DAOP14920 347 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 NQO2P16083 231 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 MDKP21741 143 aaPredicted RBP12.18□□□□□ -0.46
USP4-203ENST00000415188 DLK1P80370 383 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 PRAMEF5Q5TYX0 476 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 LRRC75A-AS1Q8N1F1 130 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 OR4A16Q8NH70 328 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 OR4S2Q8NH73 311 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 S1PR3Q99500 378 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 ACTR3CQ9C0K3 210 aaPredicted RBP12.18□□□□□ -0.46
USP4-203ENST00000415188 LINC00574Q9H8X3 128 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 MANBALQ9NQG1 85 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 DSCAML1Q8TD84 2053 aa12.18□□□□□ -0.46
USP4-203ENST00000415188 RAI1Q7Z5J4 1906 aaPredicted RBP12.18□□□□□ -0.46
USP4-203ENST00000415188 TRGV10A0A0A0MS01 117 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 KBTBD11-OT1A0A1B0GTJ5 212 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 ZNF729A6NN14 1252 aaPredicted RBP12.17□□□□□ -0.46
USP4-203ENST00000415188 FCGR3BO75015 233 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 MPDU1O75352 247 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 IFNA17P01571 189 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 IGHV1-46P01743 117 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 THBS3P49746 956 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 ELLP55199 621 aaPredicted RBP12.17□□□□□ -0.46
USP4-203ENST00000415188 EDDM3BP56851 147 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 FAM90A2PQ658T7 463 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 TMEM108Q6UXF1 575 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 CIARTQ8N365 385 aaPredicted RBP12.17□□□□□ -0.46
USP4-203ENST00000415188 CORO2AQ92828 525 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 LHX4Q969G2 390 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 ISOC2Q96AB3 205 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 Q96MF0 132 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 QTRT1Q9BXR0 403 aaKnown RBP12.17□□□□□ -0.46
USP4-203ENST00000415188 TMEM242Q9NWH2 141 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 DSCAMO60469 2012 aa12.17□□□□□ -0.46
USP4-203ENST00000415188 NAV3Q8IVL0 2385 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms