RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 THNSL2Q86YJ6 484 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 C17orf50Q8WW18 174 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 CFHR4Q92496 578 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 SEC22AQ96IW7 307 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 OR2A7Q96R45 310 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.43□□□□□ -0.58
SKA1-202ENST00000398452 TMEM140Q9NV12 185 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 FAM90A9PA6NNJ1 464 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 NCBP2LA6PVI3 153 aaKnown RBP11.42□□□□□ -0.58
SKA1-202ENST00000398452 IGKV1-39P01597 117 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 RLN2P04090 185 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 IGKV1D-39P04432 117 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 DYNLT3P51808 116 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 BRWD1-AS2P59051 145 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 UBE2KP61086 200 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 HABP2Q14520 560 aaPredicted RBP11.42□□□□□ -0.58
SKA1-202ENST00000398452 AANATQ16613 207 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 OR4A47Q6IF82 309 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 DYNAPQ8N1N2 210 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 OR8H1Q8NGG4 311 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 OR4A5Q8NH83 315 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 GPR146Q96CH1 333 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 CLCC1Q96S66 551 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 SSX3Q99909 188 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 NMES1Q9C002 83 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 FKBP11Q9NYL4 201 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 BET1LQ9NYM9 111 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 CACNG5Q9UF02 275 aa11.42□□□□□ -0.58
SKA1-202ENST00000398452 NBR2O15453 112 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 IGKV1-5P01602 117 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 PVALBP20472 110 aaPredicted RBP11.41□□□□□ -0.58
SKA1-202ENST00000398452 PAX6P26367 422 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 NKX2-1P43699 371 aaPredicted RBP11.41□□□□□ -0.58
SKA1-202ENST00000398452 S100A10P60903 97 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 POU2AF1Q16633 256 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 C2orf68Q2NKX9 166 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 NMSQ5H8A3 153 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 C9orf139Q6ZV77 190 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 VKORC1L1Q8N0U8 176 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 TEX45Q8NA69 505 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 ZBTB8BQ8NAP8 495 aaPredicted RBP11.41□□□□□ -0.58
SKA1-202ENST00000398452 C22orf15Q8WYQ4 148 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 EAF1Q96JC9 268 aaPredicted RBP11.41□□□□□ -0.58
SKA1-202ENST00000398452 OR10C1Q96KK4 312 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 TMEM160Q9NX00 188 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 COA4Q9NYJ1 87 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 METTL1Q9UBP6 276 aaKnown RBP11.41□□□□□ -0.58
SKA1-202ENST00000398452 PRNDQ9UKY0 176 aa11.41□□□□□ -0.58
SKA1-202ENST00000398452 SLC25A17O43808 307 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 MED6O75586 246 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 FSHBP01225 129 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 IFNA17P01571 189 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 SAA1P0DJI8 122 aaPredicted RBP11.4□□□□□ -0.58
SKA1-202ENST00000398452 CD24P25063 80 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 DEFB112Q30KQ8 113 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 OR2T35Q8NGX2 323 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 OR5R1Q8NH85 324 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 THAP6Q8TBB0 222 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 MDFIQ99750 246 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 COMMD5Q9GZQ3 224 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 RANGRFQ9HD47 186 aaPredicted RBP11.4□□□□□ -0.58
SKA1-202ENST00000398452 ENY2Q9NPA8 101 aa11.4□□□□□ -0.58
SKA1-202ENST00000398452 MPTX1A8MV57 137 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 H3BUX3 64 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 L7N2F9 121 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 UPK2O00526 184 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 RRHO14718 337 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 ST8SIA3O43173 380 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 KBTBD11O94819 623 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 H2BFSP57053 126 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 RPL8P62917 257 aaKnown RBP11.39□□□□□ -0.59
SKA1-202ENST00000398452 VAMP2P63027 116 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 EBI3Q14213 229 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 PSG5Q15238 335 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 LRRC37A5PQ49AS3 106 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 FOXRED2Q8IWF2 684 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 MRPL41Q8IXM3 137 aaKnown RBP11.39□□□□□ -0.59
SKA1-202ENST00000398452 MMD2Q8IY49 270 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 RASL11BQ9BPW5 248 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 CDC42EP3Q9UKI2 254 aa11.39□□□□□ -0.59
SKA1-202ENST00000398452 LSM5Q9Y4Y9 91 aaKnown RBP11.39□□□□□ -0.59
SKA1-202ENST00000398452 A0A0G2JRQ6 117 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 SRRM4A7MD48 611 aaKnown RBP11.38□□□□□ -0.59
SKA1-202ENST00000398452 FAM90A26D6RGX4 464 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 FGF2P09038 288 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 PSMB6P28072 239 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 NUP62P37198 522 aaPredicted RBP11.38□□□□□ -0.59
SKA1-202ENST00000398452 OR2B8PP59922 312 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 KRTAP1-1Q07627 177 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 IL17RELQ6ZVW7 336 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 TCTE3Q8IZS6 198 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 PUSL1Q8N0Z8 303 aaKnown RBP11.38□□□□□ -0.59
SKA1-202ENST00000398452 BCL6BQ8N143 479 aaPredicted RBP11.38□□□□□ -0.59
SKA1-202ENST00000398452 TMEM167AQ8TBQ9 72 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 PPP1R1CQ8WVI7 109 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 AJUBAQ96IF1 538 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 NSG2Q9Y328 171 aa11.38□□□□□ -0.59
SKA1-202ENST00000398452 C15orf61A6NNL5 157 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 CEBPZOSA8MTT3 80 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 M0QZK8 103 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms