RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ZNF90Q03938 601 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 ABHD12Q8N2K0 398 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 TMEM106BQ9NUM4 274 aa13.59□□□□□ -0.23
SDC4-201ENST00000372733 PRR14LQ5THK1 2151 aa13.58□□□□□ -0.23
SDC4-201ENST00000372733 A0A1W2PNU3 283 aaPredicted RBP13.58□□□□□ -0.24
SDC4-201ENST00000372733 PRSS46E5RG02 174 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 F2Z2F3 143 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 HPRT1P00492 218 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 ACP1P24666 158 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 ZNF718Q3SXZ3 478 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 RNFT1Q5M7Z0 435 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 OR4A16Q8NH70 328 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 MSL2Q9HCI7 577 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 PRRC2CQ9Y520 2896 aaKnown RBP13.58□□□□□ -0.24
SDC4-201ENST00000372733 HCFC1P51610 2035 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 C15orf65H3BRN8 121 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 MPDU1O75352 247 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 CDKN1AP38936 164 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 VDAC2P45880 294 aaPredicted RBP13.58□□□□□ -0.24
SDC4-201ENST00000372733 RPL31P62899 125 aaKnown RBP13.58□□□□□ -0.24
SDC4-201ENST00000372733 CYB5R2Q6BCY4 276 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 WDR31Q8NA23 367 aa13.58□□□□□ -0.24
SDC4-201ENST00000372733 MRPL18Q9H0U6 180 aaKnown RBP13.58□□□□□ -0.24
SDC4-201ENST00000372733 KLF13Q9Y2Y9 288 aaPredicted RBP13.58□□□□□ -0.24
SDC4-201ENST00000372733 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.57□□□□□ -0.24
SDC4-201ENST00000372733 M0R1X1 148 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 SPINT2O43291 252 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 GFRA3O60609 400 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 YPEL1O60688 119 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 AGFG2O95081 481 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 SELENOTP62341 195 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 TGFBR3Q03167 851 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 RPL39P5Q59GN2 51 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 C1orf159Q96HA4 380 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 YPEL2Q96QA6 119 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 HSPB9Q9BQS6 159 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 A6NNC1 897 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 GCHFRP30047 84 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 ARG2P78540 354 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 AARDQ4LEZ3 155 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 TPTE2P1Q5T6R2 138 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 MDS2Q8NDY4 140 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 PRR7Q8TB68 274 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 ZPBPQ9BS86 351 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 CXXC4Q9H2H0 198 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 GNG12Q9UBI6 72 aa13.57□□□□□ -0.24
SDC4-201ENST00000372733 CRISP2P16562 243 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 ZNF25P17030 456 aaPredicted RBP13.56□□□□□ -0.24
SDC4-201ENST00000372733 TPPP2P59282 170 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 CD177Q8N6Q3 437 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 OR1L6Q8NGR2 347 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 SEPSECSQ9HD40 501 aaKnown RBP13.56□□□□□ -0.24
SDC4-201ENST00000372733 PARD6AQ9NPB6 346 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 IL36BQ9NZH7 164 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 IL17BQ9UHF5 180 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 TET2Q6N021 2002 aaPredicted RBP13.56□□□□□ -0.24
SDC4-201ENST00000372733 IL6RP08887 468 aaPredicted RBP13.56□□□□□ -0.24
SDC4-201ENST00000372733 TXNDC17Q9BRA2 123 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 PAM16Q9Y3D7 125 aa13.56□□□□□ -0.24
SDC4-201ENST00000372733 TRGV5A0A0B4J1U4 118 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 KLRC4-KLRK1H3BQV0 150 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 TIMM8AO60220 97 aaPredicted RBP13.55□□□□□ -0.24
SDC4-201ENST00000372733 FOXH1O75593 365 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 IER3P46695 156 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 RPP30P78346 268 aaKnown RBP13.55□□□□□ -0.24
SDC4-201ENST00000372733 SMIM21Q3B7S5 101 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 KRTCAP3Q53RY4 240 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 TNFSF15O95150 251 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 RELBQ01201 579 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 ARSJQ5FYB0 599 aaPredicted RBP13.55□□□□□ -0.24
SDC4-201ENST00000372733 TEX43Q6ZNM6 134 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 TMEM68Q96MH6 324 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 TCF19Q9Y242 345 aa13.55□□□□□ -0.24
SDC4-201ENST00000372733 ERVK-16P61578 105 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 OR5I1Q13606 314 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 EFNB3Q15768 340 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 STPG3Q8N7X2 389 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 TMEM140Q9NV12 185 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 LSM4Q9Y4Z0 139 aaKnown RBP13.54□□□□□ -0.24
SDC4-201ENST00000372733 RNF114Q9Y508 228 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 ZDBF2Q9HCK1 2354 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 ZNF891A8MT65 544 aaPredicted RBP13.54□□□□□ -0.24
SDC4-201ENST00000372733 FCN1O00602 326 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 LAMTOR5O43504 91 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 ADH4P08319 380 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 IRF2P14316 349 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 FABP6P51161 128 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 LGALS4P56470 323 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 HTD2P86397 168 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 BAGE3Q86Y29 109 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 BAGE2Q86Y30 109 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 VN1R17PQ8TDU5 208 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 LRRC29Q8WV35 223 aa13.54□□□□□ -0.24
SDC4-201ENST00000372733 TMPRSS3P57727 454 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 UTF1Q5T230 341 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 GMPPAQ96IJ6 420 aaPredicted RBP13.53□□□□□ -0.24
SDC4-201ENST00000372733 CHODLQ9H9P2 273 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 SNURFLB1AK76 121 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 TNFSF13O75888 250 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 PAFAH1B2P68402 229 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 258.1 ms