RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 MBPP02686 304 aaPredicted RBP15.95■□□□□ 0.14
CLN3-205ENST00000359984 IL6RP08887 468 aaPredicted RBP15.95■□□□□ 0.14
CLN3-205ENST00000359984 CNTFRP26992 372 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 PSMB6P28072 239 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 ARHGDIBP52566 201 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 BPIFB3P59826 476 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 RAB32Q13637 225 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 HNF4GQ14541 408 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 FAM120AOSQ5T036 256 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 PUSL1Q8N0Z8 303 aaKnown RBP15.95■□□□□ 0.14
CLN3-205ENST00000359984 MEGF9Q9H1U4 602 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 COA4Q9NYJ1 87 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 FAM96BQ9Y3D0 163 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 SCGB1D2O95969 90 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 MOSP00540 346 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 C4BPBP20851 252 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 RELBQ01201 579 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 EBI3Q14213 229 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 TMEM65Q6PI78 240 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 EAF1Q96JC9 268 aaPredicted RBP15.95■□□□□ 0.14
CLN3-205ENST00000359984 RNF5Q99942 180 aa15.95■□□□□ 0.14
CLN3-205ENST00000359984 FXYD6-FXYD2A0A087WZ82 144 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 ARPC5O15511 151 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 NXPH3O95157 252 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 CFDP00746 253 aaPredicted RBP15.94■□□□□ 0.14
CLN3-205ENST00000359984 BRS3P32247 399 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 ID3Q02535 119 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 FGL1Q08830 312 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 HES1Q14469 280 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 OR2T10Q8NGZ9 312 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.94■□□□□ 0.14
CLN3-205ENST00000359984 ACANP16112 2415 aa15.94■□□□□ 0.14
CLN3-205ENST00000359984 SLC25A17O43808 307 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 SLC25A4P12235 298 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 NKX2-1P43699 371 aaPredicted RBP15.93■□□□□ 0.14
CLN3-205ENST00000359984 OR2B8PP59922 312 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 S100A10P60903 97 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 UBE2KP61086 200 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 PSG5Q15238 335 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 TMUB2Q71RG4 321 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 FOXRED2Q8IWF2 684 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 BCL6BQ8N143 479 aaPredicted RBP15.93■□□□□ 0.14
CLN3-205ENST00000359984 TSNAXQ99598 290 aaKnown RBP15.93■□□□□ 0.14
CLN3-205ENST00000359984 BET1LQ9NYM9 111 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 H0YIZ8 118 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 UPK2O00526 184 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 S100A11P31949 105 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 EXOSC2Q13868 293 aaKnown RBP15.93■□□□□ 0.14
CLN3-205ENST00000359984 VMA21Q3ZAQ7 101 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 THNSL2Q86YJ6 484 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 OR4A16Q8NH70 328 aa15.93■□□□□ 0.14
CLN3-205ENST00000359984 LSM5Q9Y4Y9 91 aaKnown RBP15.93■□□□□ 0.14
CLN3-205ENST00000359984 K7EPK0 472 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 ST8SIA3O43173 380 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 RBMXL2O75526 392 aaKnown RBP15.92■□□□□ 0.14
CLN3-205ENST00000359984 KBTBD11O94819 623 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 FBP1P09467 338 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 FAM106CPP0CH98 169 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 F2RL1P55085 397 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 FAM71E2Q8N5Q1 922 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 Q8N6K4 173 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 VSTM2AQ8TAG5 236 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 RNF126Q9BV68 326 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 QTRT1Q9BXR0 403 aaKnown RBP15.92■□□□□ 0.14
CLN3-205ENST00000359984 MAGT1Q9H0U3 335 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 POMT1Q9Y6A1 747 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 TLN2Q9Y4G6 2542 aa15.92■□□□□ 0.14
CLN3-205ENST00000359984 CRYGBP07316 175 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 DYNLT3P51808 116 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 POLR2GP62487 172 aaKnown RBP eCLIP15.91■□□□□ 0.14
CLN3-205ENST00000359984 C11orf87Q6NUJ2 197 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 TEX45Q8NA69 505 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 TMEM167AQ8TBQ9 72 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 PIFOQ8TCI5 191 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 C22orf15Q8WYQ4 148 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 YAE1D1Q9NRH1 226 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 TPSG1Q9NRR2 321 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 IFNA7P01567 189 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 AARDQ4LEZ3 155 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 C9orf139Q6ZV77 190 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 OR4A5Q8NH83 315 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 OR5AC2Q9NZP5 309 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 MBD2Q9UBB5 411 aa15.91■□□□□ 0.14
CLN3-205ENST00000359984 RCL1Q9Y2P8 373 aaKnown RBP15.91■□□□□ 0.14
CLN3-205ENST00000359984 MDFIC2A0A1B0GVS7 189 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 C15orf61A6NNL5 157 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 TMEM11P17152 192 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 MMDQ15546 238 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 MRGPRG-AS1Q2M3A8 158 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 DEFB112Q30KQ8 113 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 SPNS3Q6ZMD2 512 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 IL17RELQ6ZVW7 336 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 NPBQ8NG41 125 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 SSX3Q99909 188 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 MFFQ9GZY8 342 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 ZFP57Q9NU63 452 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 TMEM14BQ9NUH8 114 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 HSPB7Q9UBY9 170 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 TNFSF18Q9UNG2 199 aa15.9■□□□□ 0.14
CLN3-205ENST00000359984 FOXA2Q9Y261 457 aaPredicted RBP15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms