RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 TMEM203Q969S6 136 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 RAB3CQ96E17 227 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 PHB2Q99623 299 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 SRD5A3Q9H8P0 318 aa12.33□□□□□ -0.44
CLN3-255ENST00000637100 ERICH4A6NGS2 130 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 TEX22C9J3V5 150 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 PTGES3LE9PB15 166 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 TUSC2O75896 110 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 CRYZL1O95825 349 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 PRH1P02810 166 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 RPS25P62851 125 aaKnown RBP12.32□□□□□ -0.44
CLN3-255ENST00000637100 MMD2Q8IY49 270 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 OR10R2Q8NGX6 335 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 LINC00476Q8WZB0 136 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 WFDC10AQ9H1F0 79 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 ZNF257Q9Y2Q1 563 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 V9GY05 133 aa12.32□□□□□ -0.44
CLN3-255ENST00000637100 NPIPB5A8MRT5 1133 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 A8MWP6 167 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 CREBL2O60519 120 aaPredicted RBP12.31□□□□□ -0.44
CLN3-255ENST00000637100 GGCTO75223 188 aaKnown RBP12.31□□□□□ -0.44
CLN3-255ENST00000637100 CRYGCP07315 174 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 SAA1P0DJI8 122 aaPredicted RBP12.31□□□□□ -0.44
CLN3-255ENST00000637100 EDN2P20800 178 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 CBLN1P23435 193 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 SSX1Q16384 188 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 C15orf32Q32M92 178 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 IDO2Q6ZQW0 420 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 SLC25A42Q86VD7 318 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 WFDC3Q8IUB2 231 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 FANCD2OSQ96PS1 177 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 OVOL2Q9BRP0 275 aa12.31□□□□□ -0.44
CLN3-255ENST00000637100 IGKV1D-8A0A087WSZ0 117 aa12.3□□□□□ -0.44
CLN3-255ENST00000637100 IGLV2-14P01704 120 aa12.3□□□□□ -0.44
CLN3-255ENST00000637100 IL6RP08887 468 aaPredicted RBP12.3□□□□□ -0.44
CLN3-255ENST00000637100 HIST1H1DP16402 221 aaKnown RBP12.3□□□□□ -0.44
CLN3-255ENST00000637100 RAB6AP20340 208 aa12.3□□□□□ -0.44
CLN3-255ENST00000637100 FABP5Q01469 135 aa12.3□□□□□ -0.44
CLN3-255ENST00000637100 MLLT11Q13015 90 aaPredicted RBP12.3□□□□□ -0.44
CLN3-255ENST00000637100 EIF4EBP1Q13541 118 aaPredicted RBP12.3□□□□□ -0.44
CLN3-255ENST00000637100 RCN1Q15293 331 aa12.3□□□□□ -0.44
CLN3-255ENST00000637100 ACOT12Q8WYK0 555 aa12.3□□□□□ -0.44
CLN3-255ENST00000637100 WDR89Q96FK6 387 aaPredicted RBP12.3□□□□□ -0.44
CLN3-255ENST00000637100 TRAV1-2A0A0B4J238 106 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 A0A1B0GW64 132 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 TMEM213A2RRL7 107 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 PPP5D1E7EU14 171 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 E7EUB6 86 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 EBAG9O00559 213 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 OR2J3O76001 311 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 OR2C1O95371 312 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 HLA-DQB1P01920 261 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 ZNF735P0CB33 412 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 C8orf88P0DMB2 117 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 CALRP27797 417 aaKnown RBP12.29□□□□□ -0.44
CLN3-255ENST00000637100 BRWD1-AS2P59051 145 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 MRPS15P82914 257 aaKnown RBP12.29□□□□□ -0.44
CLN3-255ENST00000637100 C10orf55Q5SWW7 151 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 PUSL1Q8N0Z8 303 aaKnown RBP12.29□□□□□ -0.44
CLN3-255ENST00000637100 ZNF645Q8N7E2 425 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 DYNLRB2Q8TF09 96 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 CCDC140Q96MF4 163 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 OR51E2Q9H255 320 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 ACOT13Q9NPJ3 140 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 SLC2A9Q9NRM0 540 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 SCN3BQ9NY72 215 aa12.29□□□□□ -0.44
CLN3-255ENST00000637100 MPPED1O15442 326 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 SLC22A5O76082 557 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 GNB3P16520 340 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 ATF4P18848 351 aaPredicted RBP12.28□□□□□ -0.44
CLN3-255ENST00000637100 DTYMKP23919 212 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 MAS1LP35410 378 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 RPL30P62888 115 aaKnown RBP12.28□□□□□ -0.44
CLN3-255ENST00000637100 TMEM61Q8N0U2 210 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 TMEM167AQ8TBQ9 72 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 MAFIPQ8WZ33 124 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 GINS4Q9BRT9 223 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 MLXQ9UH92 298 aa12.28□□□□□ -0.44
CLN3-255ENST00000637100 TRAV25A0A0B4J276 109 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 IFITM5A6NNB3 132 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 ACTL6BO94805 426 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 HLA-AP01891 365 aaKnown RBP12.27□□□□□ -0.45
CLN3-255ENST00000637100 CTXN2P0C2S0 81 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 GADD45AP24522 165 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 PSMB6P28072 239 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 ARFRP1Q13795 201 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 GUCA2BQ16661 112 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 SLC16A13Q7RTY0 426 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 FYTTD1Q96QD9 318 aaKnown RBP12.27□□□□□ -0.45
CLN3-255ENST00000637100 MGLLQ99685 303 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 GGTLC1Q9BX51 225 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 FBXL7Q9UJT9 491 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 TP53TG1Q9Y2A0 90 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 RBMX2Q9Y388 322 aaKnown RBP12.27□□□□□ -0.45
CLN3-255ENST00000637100 OR2W1Q9Y3N9 320 aa12.27□□□□□ -0.45
CLN3-255ENST00000637100 RBM7Q9Y580 266 aaKnown RBP12.27□□□□□ -0.45
CLN3-255ENST00000637100 PCLOQ9Y6V0 5065 aa12.26□□□□□ -0.45
CLN3-255ENST00000637100 HMX3A6NHT5 357 aa12.26□□□□□ -0.45
CLN3-255ENST00000637100 NDUFB8O95169 186 aa12.26□□□□□ -0.45
CLN3-255ENST00000637100 CTRB1P17538 263 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms