RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 FCGR3BO75015 233 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 TUSC2O75896 110 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 MSMO1Q15800 293 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 TIMM50Q3ZCQ8 353 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 CROCCP3Q8IVE0 287 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 ADAD2Q8NCV1 583 aaKnown RBP14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 VSTM2AQ8TAG5 236 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 ACOT12Q8WYK0 555 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 ZNF430Q9H8G1 570 aaPredicted RBP14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 DIABLOQ9NR28 239 aa14.63□□□□□ -0.07
CCDC28A-203ENST00000617445 ANKRD34BA5PLL1 514 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 IGLV2-14P01704 120 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 SAA1P0DJI8 122 aaPredicted RBP14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 ARPC4P59998 168 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 FAM209BQ5JX69 171 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 IDNKQ5T6J7 187 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 ZNF66Q6ZN08 573 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 IDO2Q6ZQW0 420 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 SLC25A42Q86VD7 318 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 ANKRD13BQ86YJ7 626 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 BEST4Q8NFU0 473 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 OR4S2Q8NH73 311 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 NBEAL2Q6ZNJ1 2754 aa14.62□□□□□ -0.07
CCDC28A-203ENST00000617445 TRAV18A0A075B6X5 111 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 IGKV1D-13A0A0B4J2D9 117 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 FAM223BA6NKX1 122 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 IGLV1-51P01701 117 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 CLEC2LP0C7M8 214 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 IGKV1-13P0DP09 117 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 KIR2DS2P43631 304 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 DYRK1AQ13627 763 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 NEDD8Q15843 81 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 HOGA1Q86XE5 327 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 FAM223AQ8IWN6 122 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 TTC9CQ8N5M4 171 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 ZBTB34Q8NCN2 500 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 OR9G4Q8NGQ1 327 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 OR5H6Q8NGV6 325 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 SNAPC3Q92966 411 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 SLC25A38Q96DW6 304 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 ASCL2Q99929 193 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 AIFM2Q9BRQ8 373 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 SPATA2Q9UM82 520 aa14.61□□□□□ -0.07
CCDC28A-203ENST00000617445 OR2A4O95047 310 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 MAS1LP35410 378 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 CBX5P45973 191 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 RPL30P62888 115 aaKnown RBP14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 EIF4EBP1Q13541 118 aaPredicted RBP14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 MFSD4AQ8N468 514 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 TCTEX1D2Q8WW35 142 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 OR2A7Q96R45 310 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 RNF167Q9H6Y7 350 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 SIGLEC8Q9NYZ4 499 aa14.6□□□□□ -0.07
CCDC28A-203ENST00000617445 TRBV9A0A0B4J1U6 114 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 H0Y980 276 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 TNFAIP8O95379 198 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 HRASP01112 189 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 RPEL1Q2QD12 228 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 NECAP1Q8NC96 275 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 RSRP1Q9BUV0 290 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 AUNIPQ9H7T9 357 aa14.59□□□□□ -0.07
CCDC28A-203ENST00000617445 A0A087WXM4 84 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 KBTBD11O94819 623 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 APELAP0DMC3 54 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 FCGR2CP31995 323 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 SYNJ2BPP57105 145 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 RHOGP84095 191 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 ATP5G2Q06055 141 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 TMEM167AQ8TBQ9 72 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 VCX3AQ9NNX9 186 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 AKIP1Q9NQ31 210 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 ZNF257Q9Y2Q1 563 aa14.58□□□□□ -0.08
CCDC28A-203ENST00000617445 AIREO43918 545 aa14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 OR2B11Q5JQS5 317 aa14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 SBSPONQ8IVN8 264 aa14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 PUSL1Q8N0Z8 303 aaKnown RBP14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 GVQW1Q8N7I0 195 aa14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 TSPAN14Q8NG11 270 aa14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 S100A16Q96FQ6 103 aaKnown RBP14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 TAS2R8Q9NYW2 309 aa14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 PEMTQ9UBM1 199 aa14.57□□□□□ -0.08
CCDC28A-203ENST00000617445 TRIM64CA6NLI5 447 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 A8MZ25 164 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 RBFOX2O43251 390 aaKnown RBP eCLIP14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 XRCC3O43542 346 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 PPYP01298 95 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 FRMD6-AS1P0C7T7 363 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 BRWD1-AS2P59051 145 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 IL34Q6ZMJ4 242 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 OR5AP2Q8NGF4 316 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 OR13F1Q8NGS4 319 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 OR4A5Q8NH83 315 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 SECTM1Q8WVN6 248 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 GIMAP1Q8WWP7 306 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 BORCS5Q969J3 196 aa14.56□□□□□ -0.08
CCDC28A-203ENST00000617445 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 NPIPB5A8MRT5 1133 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 RBMXL2O75526 392 aaKnown RBP14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 DHFRP00374 187 aa14.55□□□□□ -0.08
CCDC28A-203ENST00000617445 TRBV12-3P01733 135 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms