RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 E7EQL1 145 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 PPIAL4DF5H284 164 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 TMEM178BH3BS89 294 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 SCAF4O95104 1147 aaKnown RBP11.21□□□□□ -0.62
NEK3-205ENST00000610828 PPIAL4FP0DN26 164 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 CASP6P55212 293 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 ERVFRD-1P60508 538 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 ICAM4Q14773 271 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 TMEM41BQ5BJD5 291 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 NCMAPQ5T1S8 102 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 ZNF787Q6DD87 383 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 SSX7Q7RTT5 188 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 RXFP4Q8TDU9 374 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 CORO2AQ92828 525 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 RCC1LQ96I51 464 aaKnown RBP11.21□□□□□ -0.62
NEK3-205ENST00000610828 ZNF251Q9BRH9 671 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 GNG13Q9P2W3 67 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 PPIAL4AQ9Y536 164 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 LINC00312Q9Y6C7 94 aa11.21□□□□□ -0.62
NEK3-205ENST00000610828 TRAV3A0A0B4J244 114 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 TRAV1-1A0A0B4J248 108 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 C7orf77A4D0Y5 90 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 FBP1P09467 338 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 FGF7P21781 194 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 FGF8P55075 233 aaPredicted RBP11.2□□□□□ -0.62
NEK3-205ENST00000610828 SPCS3P61009 180 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 RPL31P62899 125 aaKnown RBP11.2□□□□□ -0.62
NEK3-205ENST00000610828 DMRTC2Q8IXT2 367 aaPredicted RBP11.2□□□□□ -0.62
NEK3-205ENST00000610828 SMCO4Q9NRQ5 59 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 MLXQ9UH92 298 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 RPUSD1Q9UJJ7 312 aaKnown RBP11.2□□□□□ -0.62
NEK3-205ENST00000610828 PUS1Q9Y606 427 aaKnown RBP eCLIP11.2□□□□□ -0.62
NEK3-205ENST00000610828 ZFP92A6NM28 416 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 THBS3P49746 956 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 RELBQ01201 579 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 AARDQ4LEZ3 155 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 ZNF506Q5JVG8 444 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 ZNF383Q8NA42 475 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 CLCC1Q96S66 551 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 LINC00574Q9H8X3 128 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 TMEM106BQ9NUM4 274 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 ZNRD1Q9P1U0 126 aa11.2□□□□□ -0.62
NEK3-205ENST00000610828 FAM90A27PA6NNH2 459 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 C15orf62A8K5M9 175 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 EIF3GO75821 320 aaKnown RBP eCLIP11.19□□□□□ -0.62
NEK3-205ENST00000610828 IFNA10P01566 189 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 HSPB1P04792 205 aaKnown RBP11.19□□□□□ -0.62
NEK3-205ENST00000610828 SRP19P09132 144 aaKnown RBP11.19□□□□□ -0.62
NEK3-205ENST00000610828 FLI1Q01543 452 aaPredicted RBP11.19□□□□□ -0.62
NEK3-205ENST00000610828 TFF3Q07654 80 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 CYB561D1Q8N8Q1 229 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 RHOVQ96L33 236 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 GAL3ST2Q9H3Q3 398 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 UNKLQ9H9P5 680 aaKnown RBP11.19□□□□□ -0.62
NEK3-205ENST00000610828 HEYLQ9NQ87 328 aaPredicted RBP11.19□□□□□ -0.62
NEK3-205ENST00000610828 TIMM9Q9Y5J7 89 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 DAOP14920 347 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 GNB2P62879 340 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 SLC25A48Q6ZT89 311 aaKnown RBP11.19□□□□□ -0.62
NEK3-205ENST00000610828 LINC01560Q8TB33 94 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 MBD3L1Q8WWY6 194 aa11.19□□□□□ -0.62
NEK3-205ENST00000610828 H1FXQ92522 213 aaKnown RBP11.19□□□□□ -0.62
NEK3-205ENST00000610828 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 MAP1LC3B2A6NCE7 125 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 IGKV1D-33P01593 117 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 IGKV1-33P01594 117 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 CCL3L1P16619 93 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 TMEM30BQ3MIR4 351 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 KHDC3LQ587J8 217 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 ACSM6Q6P461 480 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 RPP25LQ8N5L8 163 aaKnown RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 KDF1Q8NAX2 398 aaPredicted RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 OR52E5Q8NH55 327 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 ADTRPQ96IZ2 230 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 ZNF714Q96N38 554 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 NPCDR1Q9BY65 106 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 MAP1LC3BQ9GZQ8 125 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 MS4A5Q9H3V2 200 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 SAV1Q9H4B6 383 aaPredicted RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 LOC102723971A0A1B0GUV8 181 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 FCN3O75636 299 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 CD3EP07766 207 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 CA7P43166 264 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 RPP30P78346 268 aaKnown RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 MEF2CQ06413 473 aaPredicted RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 OR4A47Q6IF82 309 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 LYPD2Q6UXB3 125 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 CENPVQ7Z7K6 275 aaPredicted RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 ZNF709Q8N972 641 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 ZCCHC14Q8WYQ9 949 aaKnown RBP11.18□□□□□ -0.62
NEK3-205ENST00000610828 SLC39A9Q9NUM3 307 aa11.18□□□□□ -0.62
NEK3-205ENST00000610828 SPTBN4Q9H254 2564 aa11.17□□□□□ -0.62
NEK3-205ENST00000610828 TET2Q6N021 2002 aaPredicted RBP11.17□□□□□ -0.62
NEK3-205ENST00000610828 CCL21O00585 134 aa11.17□□□□□ -0.62
NEK3-205ENST00000610828 ARG1P05089 322 aa11.17□□□□□ -0.62
NEK3-205ENST00000610828 APOBEC3AP31941 199 aaPredicted RBP11.17□□□□□ -0.62
NEK3-205ENST00000610828 PLA2G5P39877 138 aa11.17□□□□□ -0.62
NEK3-205ENST00000610828 HOXA1P49639 335 aaPredicted RBP11.17□□□□□ -0.62
NEK3-205ENST00000610828 VWC2Q2TAL6 325 aa11.17□□□□□ -0.62
NEK3-205ENST00000610828 ISOC2Q96AB3 205 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms