RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 TMEM61Q8N0U2 210 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 FAM89BQ8N5H3 189 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 DHRSXQ8N5I4 330 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 SETD9Q8NE22 299 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 OR6M1Q8NGM8 313 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 IL17DQ8TAD2 202 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 USMG5Q96IX5 58 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 GPHA2Q96T91 129 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 MLXQ9UH92 298 aa6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 LSM2Q9Y333 95 aaKnown RBP6.47□□□□□ -1.37
SHKBP1-220ENST00000599716 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 TRBV9A0A0B4J1U6 114 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 IGHV3-35A0A0C4DH35 117 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 A0A1B0GW64 132 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF320A2RRD8 509 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 PTGES3LE9PB15 166 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 NDUFB8O95169 186 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 REG1AP05451 166 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 FCGR3AP08637 254 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 UCHL1P09936 223 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 GNB3P16520 340 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 DUTP33316 252 aaKnown RBP6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 KIR2DS2P43631 304 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 UBE2KP61086 200 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 RPL30P62888 115 aaKnown RBP6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 MED22Q15528 200 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 RAB11BQ15907 218 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 RTL8BQ17RB0 113 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 TTC23Q5W5X9 447 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 CLEC19AQ6UXS0 136 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 C8orf59Q8N0T1 100 aaPredicted RBP6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 PHYHIPQ92561 330 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 CCDC140Q96MF4 163 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 URM1Q9BTM9 101 aaKnown RBP6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 RIMS4Q9H426 269 aaPredicted RBP6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 FKBP14Q9NWM8 211 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 UBQLN2Q9UHD9 624 aa6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 RBM7Q9Y580 266 aaKnown RBP6.46□□□□□ -1.38
SHKBP1-220ENST00000599716 TRBV6-7A0A0A0MS04 114 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 TMEM272A0A1B0GTI8 110 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 TMEM213A2RRL7 107 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 TEX22C9J3V5 150 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 SLC17A2O00624 439 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 DENRO43583 198 aaKnown RBP6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 FCGR3BO75015 233 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 TUSC2O75896 110 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 CDK1P06493 297 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 HSMCR30P0CW71 290 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 CD37P11049 281 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 AREGP15514 252 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 CBLN1P23435 193 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 OR10A3P58181 314 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 DEFB135Q30KP9 77 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 C2orf76Q3KRA6 126 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 VMA21Q3ZAQ7 101 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 TM4SF20Q53R12 229 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 BTNL8Q6UX41 500 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 UNQ9165/PRO28630Q6UXU0 137 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 UXS1Q8NBZ7 420 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 OR52B4Q8NGK2 314 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 OR4A4PQ8NGN8 299 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 OR2K2Q8NGT1 345 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 OR10J5Q8NHC4 309 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 FAM3DQ96BQ1 224 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 TMEM68Q96MH6 324 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 FYTTD1Q96QD9 318 aaKnown RBP6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 DCUN1D5Q9BTE7 237 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 CABLES2Q9BTV7 478 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 FBXL7Q9UJT9 491 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 HSF4Q9ULV5 492 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 DNAH6Q9C0G6 4158 aa6.45□□□□□ -1.38
SHKBP1-220ENST00000599716 SMIM30A4D0T7 59 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 MFSD2BA6NFX1 497 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 FAM223BA6NKX1 122 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 AIREO43918 545 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 GGCTO75223 188 aaKnown RBP6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 IL6RP08887 468 aaPredicted RBP6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 CALRP27797 417 aaKnown RBP6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 ARL3P36405 182 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 TNFRSF9Q07011 255 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 CBX3Q13185 183 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 SPHARQ15513 63 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 ZNF57Q68EA5 555 aaPredicted RBP6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 SSX9Q7RTT3 188 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 SLC16A13Q7RTY0 426 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 FAM223AQ8IWN6 122 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 LAX1Q8IWV1 398 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 TTC9CQ8N5M4 171 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 MS4A15Q8N5U1 240 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 TEX45Q8NA69 505 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 NECAP1Q8NC96 275 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 OR56B1Q8NGI3 324 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 FBLIM1Q8WUP2 373 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 THRSPQ92748 146 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 RAB3CQ96E17 227 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 FANCD2OSQ96PS1 177 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 GINS4Q9BRT9 223 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 MND1Q9BWT6 205 aa6.44□□□□□ -1.38
SHKBP1-220ENST00000599716 GGTLC1Q9BX51 225 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms