RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 SSX2Q16385 188 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 IZUMO4Q1ZYL8 232 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 LRRC37A5PQ49AS3 106 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 GPR157Q5UAW9 335 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 OR11H4Q8NGC9 324 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 THAP6Q8TBB0 222 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 RHOVQ96L33 236 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-209ENST00000573474 CSMD2Q7Z408 3487 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 WNK2Q9Y3S1 2297 aa11.04□□□□□ -0.64
CCDC40-209ENST00000573474 MAP1AP78559 2803 aaPredicted RBP11.04□□□□□ -0.64
CCDC40-209ENST00000573474 IGHV3-72A0A0B4J1Y9 119 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 SRRM4A7MD48 611 aaKnown RBP11.03□□□□□ -0.64
CCDC40-209ENST00000573474 TIMM23O14925 209 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 ST8SIA3O43173 380 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 SCGB1D2O95969 90 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 RLN2P04090 185 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 SAA4P35542 130 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 NKX2-1P43699 371 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-209ENST00000573474 LGALS7P47929 136 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 S100A10P60903 97 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 ID3Q02535 119 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 HABP2Q14520 560 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-209ENST00000573474 C11orf87Q6NUJ2 197 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 SSX9Q7RTT3 188 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 VKORC1L1Q8N0U8 176 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 AJUBAQ96IF1 538 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 HARBI1Q96MB7 349 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 RNF5Q99942 180 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 RNF126Q9BV68 326 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 MS4A7Q9GZW8 240 aaPredicted RBP11.03□□□□□ -0.64
CCDC40-209ENST00000573474 TMEM140Q9NV12 185 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 POMT1Q9Y6A1 747 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 ITPR2Q14571 2701 aa11.03□□□□□ -0.64
CCDC40-209ENST00000573474 PRRC2AP48634 2157 aaKnown RBP11.02□□□□□ -0.65
CCDC40-209ENST00000573474 FXYD6-FXYD2A0A087WZ82 144 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 TRAV40A0A0B4J280 105 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 HMSDA8MTL9 139 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 FAM90A26D6RGX4 464 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 K7EPK0 472 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 SNAPC5O75971 98 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 OR9G9P0C7N8 305 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 LYL1P12980 280 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 NKX2-5P52952 324 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-209ENST00000573474 CXorf66Q5JRM2 361 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-209ENST00000573474 OR4A47Q6IF82 309 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 PRSS54Q6PEW0 395 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 TMEM65Q6PI78 240 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 DYNAPQ8N1N2 210 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 PIP4P2Q8N4L2 257 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 FAM71E2Q8N5Q1 922 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 OR4A16Q8NH70 328 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 C17orf50Q8WW18 174 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 CFHR4Q92496 578 aa11.02□□□□□ -0.65
CCDC40-209ENST00000573474 LSM5Q9Y4Y9 91 aaKnown RBP11.02□□□□□ -0.65
CCDC40-209ENST00000573474 IGHV3OR16-10A0A075B7F0 116 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 H0YIZ8 118 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 RBMXL2O75526 392 aaKnown RBP11.01□□□□□ -0.65
CCDC40-209ENST00000573474 DEDDO75618 318 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 VENTXO95231 258 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 AVPP01185 164 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 IL6RP08887 468 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-209ENST00000573474 IGHV4-38-2P0DP08 117 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 RELBQ01201 579 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 VMA21Q3ZAQ7 101 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 ZNF546Q86UE3 836 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 FOXRED2Q8IWF2 684 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 PUSL1Q8N0Z8 303 aaKnown RBP11.01□□□□□ -0.65
CCDC40-209ENST00000573474 CIARTQ8N365 385 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-209ENST00000573474 OR4A5Q8NH83 315 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 VSTM2AQ8TAG5 236 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 RBMXL1Q96E39 390 aaKnown RBP11.01□□□□□ -0.65
CCDC40-209ENST00000573474 TSNAXQ99598 290 aaKnown RBP11.01□□□□□ -0.65
CCDC40-209ENST00000573474 BET1LQ9NYM9 111 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 MBD2Q9UBB5 411 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 CACFD1Q9UGQ2 172 aa11.01□□□□□ -0.65
CCDC40-209ENST00000573474 WRBO00258 174 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 UPK2O00526 184 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 SMAD7O15105 426 aaKnown RBP11□□□□□ -0.65
CCDC40-209ENST00000573474 MOSP00540 346 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 IGLV2-23P01705 113 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 SAA1P0DJI8 122 aaPredicted RBP11□□□□□ -0.65
CCDC40-209ENST00000573474 BRS3P32247 399 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 BPIFB3P59826 476 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 UBE2KP61086 200 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 POLR2GP62487 172 aaKnown RBP eCLIP11□□□□□ -0.65
CCDC40-209ENST00000573474 AARDQ4LEZ3 155 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 KLF17Q5JT82 389 aaPredicted RBP11□□□□□ -0.65
CCDC40-209ENST00000573474 RUSC1-AS1Q66K80 236 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 TEX45Q8NA69 505 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 GRPEL2Q8TAA5 225 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 RITA1Q96K30 269 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 OR5AC2Q9NZP5 309 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 HSPB7Q9UBY9 170 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 ITGB1BP2Q9UKP3 347 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 RCL1Q9Y2P8 373 aaKnown RBP11□□□□□ -0.65
CCDC40-209ENST00000573474 NSG2Q9Y328 171 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 CR1P17927 2039 aa11□□□□□ -0.65
CCDC40-209ENST00000573474 TRAV3A0A0B4J244 114 aa10.99□□□□□ -0.65
CCDC40-209ENST00000573474 E5RGE8 158 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms