RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PHB2Q99623 299 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 ZNF430Q9H8G1 570 aaPredicted RBP8.29□□□□□ -1.08
VPS39-208ENST00000564994 RANGRFQ9HD47 186 aaPredicted RBP8.29□□□□□ -1.08
VPS39-208ENST00000564994 ADAM30Q9UKF2 790 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 RBMX2Q9Y388 322 aaKnown RBP8.29□□□□□ -1.08
VPS39-208ENST00000564994 U3KQK5 164 aa8.29□□□□□ -1.08
VPS39-208ENST00000564994 DYNC2H1Q8NCM8 4307 aaKnown RBP8.28□□□□□ -1.08
VPS39-208ENST00000564994 TRAV18A0A075B6X5 111 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 A0A0G2JLM5 398 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 PRH1P02810 166 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 AADACP22760 399 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 TGFBR1P36897 503 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 ZNF45Q02386 682 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 KLF5Q13887 457 aaPredicted RBP8.28□□□□□ -1.08
VPS39-208ENST00000564994 CDK10Q15131 360 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 KCTD21Q4G0X4 260 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 ZNF343Q6P1L6 599 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 IL34Q6ZMJ4 242 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 OVCH2Q7RTZ1 564 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 SBSPONQ8IVN8 264 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 VKORC1L1Q8N0U8 176 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 GVQW1Q8N7I0 195 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 OR6Q1Q8NGQ2 317 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 ACOT12Q8WYK0 555 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 OR4C12Q96R67 309 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 COA4Q9NYJ1 87 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 ETV7Q9Y603 341 aa8.28□□□□□ -1.08
VPS39-208ENST00000564994 SACSQ9NZJ4 4579 aa8.27□□□□□ -1.08
VPS39-208ENST00000564994 SLC22A5O76082 557 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 IGLV1-51P01701 117 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 OR9G9P0C7N8 305 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 ZP3P21754 424 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 SCAND1P57086 179 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 HOGA1Q86XE5 327 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 Q8N1Y9 231 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 BEST4Q8NFU0 473 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 DCUN1D5Q9BTE7 237 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 AKIP1Q9NQ31 210 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 PEF1Q9UBV8 284 aaKnown RBP8.27□□□□□ -1.09
VPS39-208ENST00000564994 SPATA2Q9UM82 520 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 PRELID3BQ9Y3B1 194 aa8.27□□□□□ -1.09
VPS39-208ENST00000564994 TRBV9A0A0B4J1U6 114 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 A0A1B0GW64 132 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 E7EUB6 86 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 MPPED1O15442 326 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 FCER2P06734 321 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 FRMD6-AS1P0C7T7 363 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 FCGR2CP31995 323 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 SYNJ2BPP57105 145 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 C19orf35Q6ZS72 473 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 MMD2Q8IY49 270 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 PUSL1Q8N0Z8 303 aaKnown RBP8.26□□□□□ -1.09
VPS39-208ENST00000564994 MFSD4AQ8N468 514 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 OR9G4Q8NGQ1 327 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 TCTEX1D2Q8WW35 142 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 USMG5Q96IX5 58 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 HSD17B10Q99714 261 aaKnown RBP8.26□□□□□ -1.09
VPS39-208ENST00000564994 RSRP1Q9BUV0 290 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 ELOVL1Q9BW60 279 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 AUNIPQ9H7T9 357 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 CCL28Q9NRJ3 127 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 TAS2R8Q9NYW2 309 aa8.26□□□□□ -1.09
VPS39-208ENST00000564994 MRPS7Q9Y2R9 242 aaKnown RBP8.26□□□□□ -1.09
VPS39-208ENST00000564994 A0A0A6YYH2 397 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 HMX3A6NHT5 357 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 A6NJ64 397 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 TEX22C9J3V5 150 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 TNFSF12O43508 249 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 ACTL6BO94805 426 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 KBTBD11O94819 623 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 OR2A4O95047 310 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 CSN3P07498 182 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 IL6RP08887 468 aaPredicted RBP8.25□□□□□ -1.09
VPS39-208ENST00000564994 ARPC4P59998 168 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 RHOGP84095 191 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 ANKRD13BQ86YJ7 626 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 TTC9CQ8N5M4 171 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 OR13F1Q8NGS4 319 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 OR4S2Q8NH73 311 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 TMEM167AQ8TBQ9 72 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 SECTM1Q8WVN6 248 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 SNAPC3Q92966 411 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 OR2A7Q96R45 310 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 SPIN2AQ99865 258 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 SPIN2BQ9BPZ2 258 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 STARD9Q9P2P6 4700 aa8.25□□□□□ -1.09
VPS39-208ENST00000564994 MEIS3P1A6NDR6 274 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 BMPR1BO00238 502 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 CREBL2O60519 120 aaPredicted RBP8.24□□□□□ -1.09
VPS39-208ENST00000564994 OR2J3O76001 311 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 PPYP01298 95 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 MYOD1P15172 320 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 RPS19P39019 145 aaKnown RBP8.24□□□□□ -1.09
VPS39-208ENST00000564994 EXOSC2Q13868 293 aaKnown RBP8.24□□□□□ -1.09
VPS39-208ENST00000564994 ZNF66Q6ZN08 573 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 YIPF6Q96EC8 236 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 DIABLOQ9NR28 239 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 DMRT1Q9Y5R6 373 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 CSMD3Q7Z407 3707 aa8.24□□□□□ -1.09
VPS39-208ENST00000564994 RYR2Q92736 4967 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms