RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PLEK2Q9NYT0 353 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 IGKV1-9A0A0C4DH69 117 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 KIAA1324LA8MWY0 1029 aaPredicted RBP4.44□□□□□ -1.7
USP28-213ENST00000544967 CGAP01215 116 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 OR10J4P0C629 311 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 CRISP2P16562 243 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 GABRA2P47869 451 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 OR1D4P47884 311 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 MMDQ15546 238 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 SPIN3Q5JUX0 258 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 TMEM256Q8N2U0 113 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 SIGLECL1Q8N7X8 197 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 KCNS1Q96KK3 526 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 HSPB9Q9BQS6 159 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 VPS25Q9BRG1 176 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 ELOVL1Q9BW60 279 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 PRTFDC1Q9NRG1 225 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 PLEKHJ1Q9NW61 149 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 ZNF391Q9UJN7 358 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 LAMA5O15230 3695 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 IGKV1D-8A0A087WSZ0 117 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 A0A1W2PRS3 328 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 DIRC3C9JPN6 131 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 M0QXV9 152 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 SSSCA1O60232 199 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 DHRS3O75911 302 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 UTS2O95399 124 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 ADMP35318 185 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 KHDC1LQ5JSQ8 128 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 FAM162BQ5T6X4 162 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 MRPL54Q6P161 138 aaKnown RBP4.44□□□□□ -1.7
USP28-213ENST00000544967 DGAT2L6Q6ZPD8 337 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 OR8B12Q8NGG6 310 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 OR10G8Q8NGN5 311 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 OR1L6Q8NGR2 347 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 C16orf52Q8NHV5 167 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 ST8SIA1Q92185 356 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 NRGNQ92686 78 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 STARD4Q96DR4 205 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 DUX5Q96PT3 197 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 GPER1Q99527 375 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 SIRPDQ9H106 197 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 LIME1Q9H400 295 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 IL36BQ9NZH7 164 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 PAM16Q9Y3D7 125 aa4.44□□□□□ -1.7
USP28-213ENST00000544967 PTPRZ1P23471 2315 aaPredicted RBP4.43□□□□□ -1.7
USP28-213ENST00000544967 C9JCJ5 164 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 SIVA1O15304 175 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 S1PR2O95136 353 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 S100GP29377 79 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 S100A7P31151 101 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 VWC2Q2TAL6 325 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 WIPI1Q5MNZ9 446 aaPredicted RBP4.43□□□□□ -1.7
USP28-213ENST00000544967 Q6ZN92 141 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 FOXL2NBQ6ZUU3 175 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 SGMS2Q8NHU3 365 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 C11orf40Q8WZ69 217 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 LHX4Q969G2 390 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 ADOQ96SZ5 270 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 SFXN3Q9BWM7 321 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 SLC39A9Q9NUM3 307 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 CLN8Q9UBY8 286 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 UBE2J1Q9Y385 318 aaPredicted RBP4.43□□□□□ -1.7
USP28-213ENST00000544967 NBEAQ8NFP9 2946 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 HEATR5AQ86XA9 2040 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 TMED7-TICAM2A0A0A6YYA0 188 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 A0A1B0GV50 99 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 ZNF850A8MQ14 1090 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 NPIPA5E9PKD4 350 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 NKX2-8O15522 239 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 TRAF3IP2O43734 574 aaPredicted RBP4.43□□□□□ -1.7
USP28-213ENST00000544967 PPYP01298 95 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 SRD5A2P31213 254 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 SEC61GP60059 68 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 RUNX1Q01196 453 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 SMIM21Q3B7S5 101 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 RIF1Q5UIP0 2472 aaKnown RBP4.43□□□□□ -1.7
USP28-213ENST00000544967 WFDC3Q8IUB2 231 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 DEFB125Q8N687 156 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 OR51E1Q8TCB6 317 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 TMEM234Q8WY98 164 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 PGAM5Q96HS1 289 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 ZDHHC11Q9H8X9 412 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 ST20Q9HBF5 79 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 GP6Q9HCN6 339 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 PNRC2Q9NPJ4 139 aaKnown RBP4.43□□□□□ -1.7
USP28-213ENST00000544967 NPIPA1Q9UND3 350 aa4.43□□□□□ -1.7
USP28-213ENST00000544967 UBR5O95071 2799 aaPredicted RBP4.43□□□□□ -1.7
USP28-213ENST00000544967 TRAV9-2A0A087WT02 112 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 TRBV6-6A0A0A6YYG2 114 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 NUPR1O60356 82 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 TMEM50AO95807 157 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 TFPI2P48307 235 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 CLDN15P56746 228 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 RPS18P62269 152 aaKnown RBP4.42□□□□□ -1.7
USP28-213ENST00000544967 SNAI3Q3KNW1 292 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 FAM78BQ5VT40 261 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 PRR27Q6MZM9 219 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 C12orf54Q6X4T0 127 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 Q8NA96 180 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms