RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 MRPS7Q9Y2R9 242 aaKnown RBP11.44□□□□□ -0.58
USP28-204ENST00000537642 IGHV4OR15-8A0A075B7B6 117 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 A0A087WW49 117 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 H3BUA1 57 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 CD40LGP29965 261 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 CDK10Q15131 360 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 MSMO1Q15800 293 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 TNXAQ16473 311 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 CTF1Q16619 201 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 ZNF66Q6ZN08 573 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 ANKRD13BQ86YJ7 626 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 GIMAP1Q8WWP7 306 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 DCUN1D4Q92564 292 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 TMEM68Q96MH6 324 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 ZNF430Q9H8G1 570 aaPredicted RBP11.43□□□□□ -0.58
USP28-204ENST00000537642 IFT46Q9NQC8 304 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 ZNF355PQ9NSJ1 428 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 SCOCQ9UIL1 159 aa11.43□□□□□ -0.58
USP28-204ENST00000537642 MSGN1A6NI15 193 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 LINC01619G3V211 115 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 TNFSF12O43508 249 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 GABARAPO95166 117 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 APELAP0DMC3 54 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 NAT1P18440 290 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 SLURP1P55000 103 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 FXYD4P59646 89 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 VKORC1L1Q8N0U8 176 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 OR4S2Q8NH73 311 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 SRSF12Q8WXF0 261 aaKnown RBP11.42□□□□□ -0.58
USP28-204ENST00000537642 CMTM3Q96MX0 182 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 SLC5A7Q9GZV3 580 aa11.42□□□□□ -0.58
USP28-204ENST00000537642 BRI3O95415 125 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 APOA1P02647 267 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 HSPB1P04792 205 aaKnown RBP11.41□□□□□ -0.58
USP28-204ENST00000537642 PRSS3P35030 304 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 DGCR2P98153 550 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 MMD2Q8IY49 270 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 ZBTB34Q8NCN2 500 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 ACOT12Q8WYK0 555 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 DLX4Q92988 240 aaPredicted RBP11.41□□□□□ -0.58
USP28-204ENST00000537642 PHB2Q99623 299 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 MRPS26Q9BYN8 205 aaKnown RBP11.41□□□□□ -0.58
USP28-204ENST00000537642 TINAGL1Q9GZM7 467 aaPredicted RBP11.41□□□□□ -0.58
USP28-204ENST00000537642 EHFQ9NZC4 300 aa11.41□□□□□ -0.58
USP28-204ENST00000537642 OVOL1O14753 267 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 HPGDSO60760 199 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 PMP2P02689 132 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 ELK1P19419 428 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 KIR2DS2P43631 304 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 RFX2P48378 723 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 ALDH3B2P48448 385 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 RORCP51449 518 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 DEFA5Q01523 94 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 DYRK1AQ13627 763 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 DEFB121Q5J5C9 76 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 C10orf55Q5SWW7 151 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 GPR107Q5VW38 600 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 DHRS11Q6UWP2 260 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 ZNF818PQ6ZRF7 136 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 TMEM17Q86X19 198 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 PUSL1Q8N0Z8 303 aaKnown RBP11.4□□□□□ -0.58
USP28-204ENST00000537642 ADAD2Q8NCV1 583 aaKnown RBP11.4□□□□□ -0.58
USP28-204ENST00000537642 GPX8Q8TED1 209 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 COA4Q9NYJ1 87 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 ZMAT5Q9UDW3 170 aaKnown RBP11.4□□□□□ -0.58
USP28-204ENST00000537642 SORL1Q92673 2214 aa11.4□□□□□ -0.58
USP28-204ENST00000537642 C13orf42A0A1B0GVH6 325 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 SULT1C2O00338 296 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 CREBL2O60519 120 aaPredicted RBP11.39□□□□□ -0.59
USP28-204ENST00000537642 RAMP3O60896 148 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 RBMXL2O75526 392 aaKnown RBP11.39□□□□□ -0.59
USP28-204ENST00000537642 ACTL6BO94805 426 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 KBTBD11O94819 623 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 OR2A4O95047 310 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 OR9G9P0C7N8 305 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 HERV-K104P61576 105 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 SNX29P2Q8IUI4 249 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 LYSMD2Q8IV50 215 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 SPAG16Q8N0X2 631 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 OR5H2Q8NGV7 314 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 TMEM167AQ8TBQ9 72 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 OR2A7Q96R45 310 aa11.39□□□□□ -0.59
USP28-204ENST00000537642 ZNF2Q9BSG1 426 aaPredicted RBP11.39□□□□□ -0.59
USP28-204ENST00000537642 A0A0G2JLM5 398 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 SMIM31A0A1B0GVY4 71 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 MPPED1O15442 326 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 GNRHRP30968 328 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 ECI1P42126 302 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 INSL3P51460 131 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 TAS2R46P59540 309 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 SSX9Q7RTT3 188 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 VSTM2AQ8TAG5 236 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 MOB3AQ96BX8 217 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 PRR25Q96S07 402 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 SPIN2AQ99865 258 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 SPIN2BQ9BPZ2 258 aa11.38□□□□□ -0.59
USP28-204ENST00000537642 ANKRD34BA5PLL1 514 aa11.37□□□□□ -0.59
USP28-204ENST00000537642 HMX3A6NHT5 357 aa11.37□□□□□ -0.59
USP28-204ENST00000537642 TEX22C9J3V5 150 aa11.37□□□□□ -0.59
USP28-204ENST00000537642 E7EUB6 86 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 124 ms