RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TOLLIPQ9H0E2 274 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 ATG5Q9H1Y0 275 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 OR2D2Q9H210 308 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 KLK15Q9H2R5 256 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 METTL1Q9UBP6 276 aaKnown RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 RNF150Q9ULK6 438 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 STUB1Q9UNE7 303 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 GAB2Q9UQC2 676 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 FOXA2Q9Y261 457 aaPredicted RBP5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 SORL1Q92673 2214 aa5.28□□□□□ -1.56
CCDC88A-213ENST00000476903 TRBV6-7A0A0A0MS04 114 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 SEC14L6B5MCN3 397 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 I3L521 148 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 FCN1O00602 326 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 PROP1O75360 226 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 SCGNO76038 276 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 CA2P00918 260 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 IGKV1-16P04430 117 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 GSTT2P0CG29 244 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 GSTT2BP0CG30 244 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 CD40LGP29965 261 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 LUMP51884 338 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF616Q08AN1 781 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 CBX3Q13185 183 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 KIAA0141Q14154 515 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 PSG5Q15238 335 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 C19orf54Q5BKX5 351 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 IGSF11Q5DX21 431 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF773Q6PK81 442 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 UNQ5815/PRO19632Q6UWF5 114 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF562Q6V9R5 426 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 Q6ZS49 121 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 PPP1R27Q86WC6 154 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 NR2C2APQ86WQ0 139 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 LINC00469Q8N7U9 141 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 OR1N2Q8NGR9 330 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 MAFIPQ8WZ33 124 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 FLYWCH2Q96CP2 140 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 CLCC1Q96S66 551 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 KRTAP1-5Q9BYS1 174 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 GNB4Q9HAV0 340 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 SLC35D1Q9NTN3 355 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 TXNL4BQ9NX01 149 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF230Q9UIE0 474 aaPredicted RBP5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 SSR3Q9UNL2 185 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 FBXO7Q9Y3I1 522 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 RBM7Q9Y580 266 aaKnown RBP5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 NUBP2Q9Y5Y2 271 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 A3GALT2U3KPV4 340 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 TNCP24821 2201 aa5.27□□□□□ -1.57
CCDC88A-213ENST00000476903 SMIM30A4D0T7 59 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 SLC25A17O43808 307 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 NOL3O60936 208 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 LGALS1P09382 135 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 OR8U9P0C7N5 309 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 RRASP10301 218 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 EGR2P11161 476 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 DTYMKP23919 212 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 LGALS7P47929 136 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 INSL3P51460 131 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 LINC00205P59089 165 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 GNB1P62873 340 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 PITPNAQ00169 270 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 CD69Q07108 199 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 FXYD3Q14802 87 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 RTL8BQ17RB0 113 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF260Q3ZCT1 412 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 AKIRIN2Q53H80 203 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 ACTBL2Q562R1 376 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 HACD4Q5VWC8 232 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 H1FOOQ8IZA3 346 aaPredicted RBP5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 ARPC1AQ92747 370 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 ADTRPQ96IZ2 230 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 HARBI1Q96MB7 349 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 OR5B12Q96R08 314 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 FAM103A1Q9BTL3 118 aaKnown RBP5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 SDHAF2Q9NX18 166 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 DAPK2Q9UIK4 370 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 COL7A1Q02388 2944 aa5.26□□□□□ -1.57
CCDC88A-213ENST00000476903 LINC01619G3V211 115 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 H3BUA1 57 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 OVOL1O14753 267 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 SOX15O60248 233 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 CNIH1O95406 144 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 IGLV2-23P01705 113 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 CTXN2P0C2S0 81 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 CLEC2LP0C7M8 214 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 GYPEP15421 78 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 SDC2P34741 201 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 SCAND1P57086 179 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 TPPP2P59282 170 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 KRTAP10-6P60371 365 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 CDNFQ49AH0 187 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 ASPHD1Q5U4P2 390 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 SFXN4Q6P4A7 337 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF429Q86V71 674 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 ZNF645Q8N7E2 425 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 CLRN3Q8NCR9 226 aa5.25□□□□□ -1.57
CCDC88A-213ENST00000476903 LFNGQ8NES3 379 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms