RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 CYCSP99999 105 aaKnown RBP11.48□□□□□ -0.57
SKA1-202ENST00000398452 SCGB2A2Q13296 93 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 FCN2Q15485 313 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 RUSC1-AS1Q66K80 236 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 BRD3OSQ6XYD6 125 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 AKAP14Q86UN6 197 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 FAM219AQ8IW50 185 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 SLC35G3Q8N808 338 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 DDB2Q92466 427 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 R3HDM4Q96D70 268 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 HARBI1Q96MB7 349 aa11.48□□□□□ -0.57
SKA1-202ENST00000398452 SONP18583 2426 aaKnown RBP11.48□□□□□ -0.57
SKA1-202ENST00000398452 IGHV3-72A0A0B4J1Y9 119 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 INAFM1C9JVW0 142 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 TIMM23O14925 209 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 CCNKO75909 580 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 KRASP01116 189 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 FAM106CPP0CH98 169 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 LGALS7P47929 136 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 LINC00205P59089 165 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 VMA21Q3ZAQ7 101 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 GGNBP1Q5YKI7 109 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 C1orf229Q6ZS94 237 aaPredicted RBP11.47□□□□□ -0.57
SKA1-202ENST00000398452 LYZL2Q7Z4W2 148 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 OR5M8Q8NGP6 311 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 OR2T10Q8NGZ9 312 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 VSTM2AQ8TAG5 236 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 ASB13Q8WXK3 278 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 LSM10Q969L4 123 aaKnown RBP11.47□□□□□ -0.57
SKA1-202ENST00000398452 TSNAXQ99598 290 aaKnown RBP11.47□□□□□ -0.57
SKA1-202ENST00000398452 KIAA1456Q9P272 454 aa11.47□□□□□ -0.57
SKA1-202ENST00000398452 A0A1W2PPI3 338 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 BTBD17A6NE02 478 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 DBX1A6NMT0 343 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 MARCH11A6NNE9 402 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 CCSO14618 274 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 ADAP1O75689 374 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 SNAPC5O75971 98 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 SULT1A3P0DMM9 295 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 SULT1A4P0DMN0 295 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 ZNF585BQ52M93 769 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 TMEM177Q53S58 311 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 SSX9Q7RTT3 188 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 RNF5Q99942 180 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 CHIAQ9BZP6 476 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 ZNF436Q9C0F3 470 aaPredicted RBP11.46□□□□□ -0.57
SKA1-202ENST00000398452 RANBP3Q9H6Z4 567 aaPredicted RBP11.46□□□□□ -0.57
SKA1-202ENST00000398452 GSKIPQ9P0R6 139 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 MMP24Q9Y5R2 645 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 CR1P17927 2039 aa11.46□□□□□ -0.57
SKA1-202ENST00000398452 ZANQ9Y493 2812 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 A0A0U1RQK1 487 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 MOSP00540 346 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 IGKV1D-33P01593 117 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 IGKV1-33P01594 117 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 HLA-GP17693 338 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 G6PCP35575 357 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 CD83Q01151 205 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 PLGLAQ15195 96 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 IAH1Q2TAA2 248 aaPredicted RBP11.45□□□□□ -0.58
SKA1-202ENST00000398452 OR4A16Q8NH70 328 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 OR1S1Q8NH92 325 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 LHFPL5Q8TAF8 219 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 CHAC2Q8WUX2 184 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 RHOVQ96L33 236 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 C2orf50Q96LR7 162 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 ZFP57Q9NU63 452 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 C1RLQ9NZP8 487 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 CACFD1Q9UGQ2 172 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 ABCA1O95477 2261 aa11.45□□□□□ -0.58
SKA1-202ENST00000398452 A0A1B0GU03 582 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 WRBO00258 174 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 VENTXO95231 258 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 SIX6O95475 246 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 IGKV1-16P04430 117 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 SNRNP70P08621 437 aaKnown RBP11.44□□□□□ -0.58
SKA1-202ENST00000398452 GIPP09681 153 aaPredicted RBP11.44□□□□□ -0.58
SKA1-202ENST00000398452 TMEM11P17152 192 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 SMCO1Q147U7 214 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 LRRC75BQ2VPJ9 315 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 KLF17Q5JT82 389 aaPredicted RBP11.44□□□□□ -0.58
SKA1-202ENST00000398452 FAM120AOSQ5T036 256 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 PRIMA1Q86XR5 153 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 OR11H7Q8NGC8 314 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 MEGF9Q9H1U4 602 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 PITPNC1Q9UKF7 332 aa11.44□□□□□ -0.58
SKA1-202ENST00000398452 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.44□□□□□ -0.58
SKA1-202ENST00000398452 ACTL6BO94805 426 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 OR2A4O95047 310 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 SPDEFO95238 335 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 SCGB1D2O95969 90 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 PET100P0DJ07 73 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 SLC25A6P12236 298 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 CXCL3P19876 107 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 RAP2BP61225 183 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 FGL1Q08830 312 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 HNF4GQ14541 408 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 MMDQ15546 238 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 LDLRAD2Q5SZI1 272 aa11.43□□□□□ -0.58
SKA1-202ENST00000398452 RBMS3Q6XE24 437 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms