RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CD33P20138 364 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 TPPP2P59282 170 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 RHOBP62745 196 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 KIAA1644Q3SXP7 199 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF585BQ52M93 769 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 RPL39P5Q59GN2 51 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 Q6ZPA2 131 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 TCF23Q7RTU1 214 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 SARAFQ96BY9 339 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF331Q9NQX6 463 aaPredicted RBP13.57□□□□□ -0.24
PCDH1-203ENST00000394536 MED12LQ86YW9 2145 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 SNURFLB1AK76 121 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 NTN3O00634 580 aaPredicted RBP13.57□□□□□ -0.24
PCDH1-203ENST00000394536 PDE6DO43924 150 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 CEACAM1P13688 526 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF726P1Q15940 193 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 TGIF2LXQ8IUE1 241 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 RBMXL3Q8N7X1 1067 aaKnown RBP13.57□□□□□ -0.24
PCDH1-203ENST00000394536 FAM216AQ8WUB2 273 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 FGF23Q9GZV9 251 aaPredicted RBP13.57□□□□□ -0.24
PCDH1-203ENST00000394536 SLC17A3O00476 420 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 OR10J4P0C629 311 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 CBLN1P23435 193 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 GNG4P50150 75 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 DEFB109BQ30KR1 87 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 SSX7Q7RTT5 188 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 RND1Q92730 232 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 COMMD5Q9GZQ3 224 aa13.57□□□□□ -0.24
PCDH1-203ENST00000394536 H0Y8G0 127 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 AMBPP02760 352 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 GZMHP20718 246 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 AMTP48728 403 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 CD81P60033 236 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 CYB5R2Q6BCY4 276 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF497Q6ZNH5 498 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 BCL2L2Q92843 193 aaPredicted RBP13.56□□□□□ -0.24
PCDH1-203ENST00000394536 DERL1Q9BUN8 251 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 VAMP8Q9BV40 100 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF586Q9NXT0 402 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 SMPD2O60906 423 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 TNFSF4P23510 183 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 MRPS11P82912 194 aaKnown RBP13.56□□□□□ -0.24
PCDH1-203ENST00000394536 FAM201AQ5SY85 155 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 BORCS7Q96B45 105 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 EYSQ5T1H1 3165 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 C9orf172C9J069 976 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 NPY1RP25929 384 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF439Q8NDP4 499 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 DDA1Q9BW61 102 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 SH2D2AQ9NP31 389 aa13.56□□□□□ -0.24
PCDH1-203ENST00000394536 SUMO1P63165 101 aaKnown RBP13.55□□□□□ -0.24
PCDH1-203ENST00000394536 NRN1LQ496H8 165 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 COLCA1Q6ZS62 124 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 FAM214BQ7L5A3 538 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 HSPB9Q9BQS6 159 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 ZFHX2Q9C0A1 2572 aaPredicted RBP13.55□□□□□ -0.24
PCDH1-203ENST00000394536 TRBV24-1A0A075B6N3 115 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 IL18BPO95998 194 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF25P17030 456 aaPredicted RBP13.55□□□□□ -0.24
PCDH1-203ENST00000394536 CCKARP32238 428 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 RAB9BQ9NP90 201 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 CLCF1Q9UBD9 225 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 TRGV10A0A0A0MS01 117 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 TRAV1-1A0A0B4J248 108 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 M0R143 59 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 RAB29O14966 203 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 GMPPAQ96IJ6 420 aaPredicted RBP13.55□□□□□ -0.24
PCDH1-203ENST00000394536 WIPI2Q9Y4P8 454 aa13.55□□□□□ -0.24
PCDH1-203ENST00000394536 TNCP24821 2201 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 C21orf140B9A014 251 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 NKX2-8O15522 239 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 IGKV1D-33P01593 117 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 IGKV1-33P01594 117 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 IGHV3-48P01763 117 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 NUBP1P53384 320 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 OR1L6Q8NGR2 347 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 IGKV3D-15A0A087WSY6 115 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 ZNF253O75346 499 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 TOX4O94842 621 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 FXYD3Q14802 87 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 INO80CQ6PI98 192 aaPredicted RBP13.54□□□□□ -0.24
PCDH1-203ENST00000394536 TEPPQ6URK8 271 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 CISD2Q8N5K1 135 aaKnown RBP13.54□□□□□ -0.24
PCDH1-203ENST00000394536 OR8I2Q8N0Y5 310 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 OR4S2Q8NH73 311 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 GTF3AQ92664 365 aaKnown RBP13.54□□□□□ -0.24
PCDH1-203ENST00000394536 C14orf144Q96I85 54 aa13.54□□□□□ -0.24
PCDH1-203ENST00000394536 CXorf1O96002 111 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 HAPLN4Q86UW8 402 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 NPVFQ9HCQ7 196 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 MYO15AQ9UKN7 3530 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 SCO2A0A1W2PP80 73 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 HELTA6NFD8 242 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 GALR2O43603 387 aaPredicted RBP13.53□□□□□ -0.24
PCDH1-203ENST00000394536 HPRT1P00492 218 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 ADH4P08319 380 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 REG1BP48304 166 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 CAMPP49913 170 aa13.53□□□□□ -0.24
PCDH1-203ENST00000394536 RPL31P62899 125 aaKnown RBP13.53□□□□□ -0.24
PCDH1-203ENST00000394536 SLC35E1Q96K37 410 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms