RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 RCC1LQ96I51 464 aaKnown RBP17.79■□□□□ 0.44
TRIM54-202ENST00000380075 GAFA1Q96PS6 74 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 LINC00574Q9H8X3 128 aa17.79■□□□□ 0.44
TRIM54-202ENST00000380075 CISD1Q9NZ45 108 aaKnown RBP17.79■□□□□ 0.44
TRIM54-202ENST00000380075 TSPAN9O75954 239 aa17.78■□□□□ 0.44
TRIM54-202ENST00000380075 CRYBA1P05813 215 aa17.78■□□□□ 0.44
TRIM54-202ENST00000380075 SPCS3P61009 180 aa17.78■□□□□ 0.44
TRIM54-202ENST00000380075 PDLIM3Q53GG5 364 aaPredicted RBP17.78■□□□□ 0.44
TRIM54-202ENST00000380075 PRAMEF5Q5TYX0 476 aa17.78■□□□□ 0.44
TRIM54-202ENST00000380075 ETV3LQ6ZN32 361 aa17.78■□□□□ 0.44
TRIM54-202ENST00000380075 CORO2AQ92828 525 aa17.78■□□□□ 0.44
TRIM54-202ENST00000380075 ZNF729A6NN14 1252 aaPredicted RBP17.77■□□□□ 0.44
TRIM54-202ENST00000380075 NQO2P16083 231 aa17.77■□□□□ 0.44
TRIM54-202ENST00000380075 ZNF134P52741 427 aa17.77■□□□□ 0.44
TRIM54-202ENST00000380075 FAM201AQ5SY85 155 aa17.77■□□□□ 0.44
TRIM54-202ENST00000380075 OR4S2Q8NH73 311 aa17.77■□□□□ 0.44
TRIM54-202ENST00000380075 ZDHHC16Q969W1 377 aa17.77■□□□□ 0.44
TRIM54-202ENST00000380075 ADTRPQ96IZ2 230 aa17.77■□□□□ 0.44
TRIM54-202ENST00000380075 VSIRQ9H7M9 311 aa17.77■□□□□ 0.44
TRIM54-202ENST00000380075 CYB5R3P00387 301 aaPredicted RBP17.77■□□□□ 0.43
TRIM54-202ENST00000380075 IFNA1P01562 189 aa17.77■□□□□ 0.43
TRIM54-202ENST00000380075 BCL2P10415 239 aa17.77■□□□□ 0.43
TRIM54-202ENST00000380075 RAB13P51153 203 aa17.77■□□□□ 0.43
TRIM54-202ENST00000380075 LINC00205P59089 165 aa17.77■□□□□ 0.43
TRIM54-202ENST00000380075 ZNF726P1Q15940 193 aa17.77■□□□□ 0.43
TRIM54-202ENST00000380075 OR4A16Q8NH70 328 aa17.77■□□□□ 0.43
TRIM54-202ENST00000380075 DDB2Q92466 427 aa17.77■□□□□ 0.43
TRIM54-202ENST00000380075 QTRT1Q9BXR0 403 aaKnown RBP17.77■□□□□ 0.43
TRIM54-202ENST00000380075 PUS1Q9Y606 427 aaKnown RBP eCLIP17.77■□□□□ 0.43
TRIM54-202ENST00000380075 OR9G9P0C7N8 305 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 THBS3P49746 956 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 RPL39P5Q59GN2 51 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 WFDC8Q8IUA0 241 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 HIST1H2BAQ96A08 127 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 P2RX4Q99571 388 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 C20orf24Q9BUV8 137 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 GNG13Q9P2W3 67 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 LRRK2Q5S007 2527 aa17.76■□□□□ 0.43
TRIM54-202ENST00000380075 H3BQ15 152 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 SOX15O60248 233 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 AKR1C3P42330 323 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 IDI2-AS1Q9NZ38 188 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 DOPEY1Q5JWR5 2465 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 MAP1LC3B2A6NCE7 125 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 DPRXA6NFQ7 191 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 NKX6-3A6NJ46 265 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 C17orf100A8MU93 164 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 VSTM5A8MXK1 200 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 IFNA17P01571 189 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 SELLP14151 372 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 ADIPOQQ15848 244 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 LCN15Q6UWW0 184 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 SLC35E3Q7Z769 313 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 CYB561D1Q8N8Q1 229 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 PLPPR2Q96GM1 343 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 NIPSNAP3BQ9BS92 247 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 MAP1LC3BQ9GZQ8 125 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 BIN3Q9NQY0 253 aa17.75■□□□□ 0.43
TRIM54-202ENST00000380075 A0A087WWC5 75 aa17.74■□□□□ 0.43
TRIM54-202ENST00000380075 FGF7P21781 194 aa17.74■□□□□ 0.43
TRIM54-202ENST00000380075 TAGLN2P37802 199 aaKnown RBP17.74■□□□□ 0.43
TRIM54-202ENST00000380075 CT45A1Q5HYN5 189 aa17.74■□□□□ 0.43
TRIM54-202ENST00000380075 ZNF429Q86V71 674 aa17.74■□□□□ 0.43
TRIM54-202ENST00000380075 CT45A3Q8NHU0 189 aa17.74■□□□□ 0.43
TRIM54-202ENST00000380075 SLC39A9Q9NUM3 307 aa17.74■□□□□ 0.43
TRIM54-202ENST00000380075 C15orf62A8K5M9 175 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 C17orf112F2Z3M2 114 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 ARG1P05089 322 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 THBDP07204 575 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 OR4A8P0C604 315 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 MDKP21741 143 aaPredicted RBP17.73■□□□□ 0.43
TRIM54-202ENST00000380075 ELLP55199 621 aaPredicted RBP17.73■□□□□ 0.43
TRIM54-202ENST00000380075 RAB5BP61020 215 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 TFF3Q07654 80 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 ZNF709Q8N972 641 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 ZNF439Q8NDP4 499 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 TVP23CQ96ET8 276 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 CCL13Q99616 98 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 ZNF251Q9BRH9 671 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 VAX2Q9UIW0 290 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 CACNA1DQ01668 2161 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 hADV38S2A0JD32 116 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 SLC31A2O15432 143 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 NDUFS6O75380 124 aaKnown RBP17.73■□□□□ 0.43
TRIM54-202ENST00000380075 GYPAP02724 150 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 GRNP28799 593 aaKnown RBP17.73■□□□□ 0.43
TRIM54-202ENST00000380075 MAS1LP35410 378 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 RBMS3Q6XE24 437 aaKnown RBP17.73■□□□□ 0.43
TRIM54-202ENST00000380075 DEFB108BQ8NET1 73 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 OR10A7Q8NGE5 316 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 GGACTQ9BVM4 153 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 NGBQ9NPG2 151 aa17.73■□□□□ 0.43
TRIM54-202ENST00000380075 USF3Q68DE3 2245 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 TRAV38-1A0A0B4J264 116 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 CTXND1A0A1B0GTU2 59 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 NDUFA2O43678 99 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 OR2B8PP59922 312 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 RELBQ01201 579 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 BSPH1Q075Z2 132 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 TCF23Q7RTU1 214 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms