RNA–Protein interactions for RNA: ENST00000374253.9

CNKSR1-202, Transcript of connector enhancer of kinase suppressor of Ras 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CNKSR1, Length 2,538 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR1-202ENST00000374253 MAP1LC3BQ9GZQ8 125 aa13.17□□□□□ -0.3
CNKSR1-202ENST00000374253 SMCO3A2RU48 225 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 C15orf62A8K5M9 175 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 ZNF788Q6ZQV5 615 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 TMEM140Q9NV12 185 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 LAMP3Q9UQV4 416 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 LOC102723971A0A1B0GUV8 181 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 C17orf100A8MU93 164 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 K7ENP7 123 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 IFNA10P01566 189 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 OPN1MWP04001 364 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 OPN1MW2P0DN77 364 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 OPN1MW3P0DN78 364 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 AKR1D1P51857 326 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 DPPA3Q6W0C5 159 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 ABHD12Q8N2K0 398 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 NUP37Q8NFH4 326 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 TMEM147Q9BVK8 224 aa13.16□□□□□ -0.3
CNKSR1-202ENST00000374253 RRHO14718 337 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 GCSAMLQ5JQS6 135 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 TCTEX1D1Q8N7M0 179 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 GATAD1Q8WUU5 269 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 RND1Q92730 232 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 LHX4Q969G2 390 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 HEYLQ9NQ87 328 aaPredicted RBP13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 SLC39A9Q9NUM3 307 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 PRELID3BQ9Y3B1 194 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 FCN3O75636 299 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 CCL3L1P16619 93 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 COL8A2P25067 703 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 RPL35P42766 123 aaKnown RBP13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 RAB13P51153 203 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 ERVK-16P61578 105 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 MRPS11P82912 194 aaKnown RBP13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 SERF2P84101 59 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 FFAR4Q5NUL3 377 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 ZNF383Q8NA42 475 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 HINT2Q9BX68 163 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 SAP30LQ9HAJ7 183 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 PRELID1Q9Y255 219 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 URGCP-MRPS24S4R325 110 aa13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 ANKHD1Q8IWZ3 2542 aaKnown RBP13.15□□□□□ -0.3
CNKSR1-202ENST00000374253 TRGV8A0A0C4DH27 118 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 HSPB1P04792 205 aaKnown RBP13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 BCL2P10415 239 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 TAGLN2P37802 199 aaKnown RBP13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 DLK1P80370 383 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 C15orf54Q8N8G6 183 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 ZNF251Q9BRH9 671 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 NPCDR1Q9BY65 106 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 ELOVL5Q9NYP7 299 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 NQO2P16083 231 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 RELBQ01201 579 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 HABP2Q14520 560 aaPredicted RBP13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 ZNF343Q6P1L6 599 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 PINX1Q96BK5 328 aaKnown RBP13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 RHOVQ96L33 236 aa13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 CIB3Q96Q77 187 aaPredicted RBP13.14□□□□□ -0.31
CNKSR1-202ENST00000374253 KHDC3LQ587J8 217 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 OR10G4Q8NGN3 311 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 OR10G9Q8NGN4 311 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 OR10G7Q8NGN6 311 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 MBD3L1Q8WWY6 194 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 DDB2Q92466 427 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 IDI2-AS1Q9NZ38 188 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 SSUH2Q9Y2M2 353 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 SVEP1Q4LDE5 3571 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 TRAV1-1A0A0B4J248 108 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 OR2C1O95371 312 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 IGKV1-16P04430 117 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 OR8U8P0C7N1 319 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 RHEBQ15382 184 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 LYPD2Q6UXB3 125 aa13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 H1FXQ92522 213 aaKnown RBP13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 SLC25A10Q9UBX3 287 aaPredicted RBP13.13□□□□□ -0.31
CNKSR1-202ENST00000374253 TNFRSF1AP19438 455 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 REG1BP48304 166 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 HOXA1P49639 335 aaPredicted RBP13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 NIPSNAP3BQ9BS92 247 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 SMDT1Q9H4I9 107 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 JKAMPQ9P055 326 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 ZNF835Q9Y2P0 537 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 ASH1LQ9NR48 2969 aaKnown RBP13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 RAB7AP51149 207 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 FAM90A2PQ658T7 463 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 OR4A47Q6IF82 309 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 ZNF439Q8NDP4 499 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 OR4S2Q8NH73 311 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 TMEM170AQ8WVE7 144 aa13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 ZCCHC14Q8WYQ9 949 aaKnown RBP13.12□□□□□ -0.31
CNKSR1-202ENST00000374253 GRNP28799 593 aaKnown RBP13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 SPCS3P61009 180 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 RPL31P62899 125 aaKnown RBP13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 PRB3Q04118 309 aaPredicted RBP13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 TEX36Q5VZQ5 186 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 ZNF709Q8N972 641 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 CA5BP1Q8WTZ4 195 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 SEBOXQ9HB31 216 aaPredicted RBP13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 TCF19Q9Y242 345 aa13.11□□□□□ -0.31
CNKSR1-202ENST00000374253 RAXQ9Y2V3 346 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms