RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 KISS1Q15726 138 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 MRM1Q6IN84 353 aaKnown RBP3.44□□□□□ -1.86
USH2A-202ENST00000366942 EPGNQ6UW88 154 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 HIST2H3AQ71DI3 136 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 ZNF534Q76KX8 674 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 SPRED2Q7Z698 418 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 OR2D3Q8NGH3 330 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 OTOSQ8NHW6 89 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 WNT5BQ9H1J7 359 aa3.44□□□□□ -1.86
USH2A-202ENST00000366942 IGLV3-12A0A075B6K2 115 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TRAV6A0A075B6T7 132 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TCRBV3S1A0A5B6 114 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ANKRD65E5RJM6 399 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 FGF7P21781 194 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 FCGR2BP31994 310 aaPredicted RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 P2RY1P47900 373 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TDGF1P3P51864 188 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 FBLN7Q53RD9 439 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 C1QL4Q86Z23 238 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 BATF2Q8N1L9 274 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 MAPK1IP1LQ8NDC0 245 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 SMIM19Q96E16 107 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 CLDN16Q9Y5I7 305 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 COL22A1Q8NFW1 1626 aaPredicted RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 IGHV2-70DA0A0C4DH43 119 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 J3QR89 54 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 SDHDO14521 159 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 HLA-AP01891 365 aaKnown RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 S100A11P31949 105 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ACVR1Q04771 509 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 EFNB3Q15768 340 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ACTL10Q5JWF8 245 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TBPL2Q6SJ96 375 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ZNF493Q6ZR52 646 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 C9orf40Q8IXQ3 194 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 LRRC75AQ8NAA5 344 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TMEM174Q8WUU8 243 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PARP12Q9H0J9 701 aaKnown RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 ICOSQ9Y6W8 199 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TNS1Q9HBL0 1735 aaKnown RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 TRGV1A0A0A0MS02 117 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PRR32B1ATL7 298 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PPP1R2P9O14990 202 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 IGHV3-13P01766 116 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 LINC00869P0C866 280 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PRR20EP86478 221 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PRR20CP86479 221 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PRR20DP86480 221 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PRR20BP86481 221 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PRR20AP86496 221 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 GHSRQ92847 366 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 HGDQ93099 445 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PTX4Q96A99 478 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ZNF503Q96F45 646 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 SCARF2Q96GP6 870 aaPredicted RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 A0A0U1RQV1 116 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TMEM129A0AVI4 362 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 H3BUA1 57 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TGFBR3LH3BV60 316 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 CD74P04233 296 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PATE4P0C8F1 98 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ZNF250P15622 560 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 SSBP1Q04837 148 aaKnown RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 RUSC1-AS1Q66K80 236 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 OR51G1Q8NGK1 321 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 NABP1Q96AH0 204 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 CST9LQ9H4G1 147 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TMEM14BQ9NUH8 114 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 MRPL27Q9P0M9 148 aaKnown RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 KIF20BQ96Q89 1820 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ELOA3CA0A087WX78 387 aaPredicted RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 TRAV25A0A0B4J276 109 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ZIC3O60481 467 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ATP5LO75964 103 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 SPNP16150 400 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 RBM11P57052 281 aaKnown RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 ZIC1Q15915 447 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 HLA-DRB5Q30154 266 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 C18orf21Q32NC0 220 aaPredicted RBP3.43□□□□□ -1.86
USH2A-202ENST00000366942 FAM74A4Q5TZK3 123 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 RFPL4BQ6ZWI9 263 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PARP16Q8N5Y8 322 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 LRTM2Q8N967 370 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TMEM255BQ8WV15 326 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 WDR34Q96EX3 536 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 PGPEP1Q9NXJ5 209 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TOMM7Q9P0U1 55 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 ANAPC10Q9UM13 185 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 RFNGQ9Y644 331 aa3.43□□□□□ -1.86
USH2A-202ENST00000366942 TRAV10A0A0B4J240 114 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 LYPD3O95274 346 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 PSMG4Q5JS54 123 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 S100A7L2Q5SY68 101 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 RBM45Q8IUH3 476 aaKnown RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 OR2C3Q8N628 320 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 WWC2-AS2Q96NR7 200 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 DAZ1Q9NQZ3 744 aaKnown RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 PAM16Q9Y3D7 125 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 FASNP49327 2511 aaKnown RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 A0A0U1RQS6 177 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms