RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 IL3RAP26951 378 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 ARHGDIBP52566 201 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 RELBQ01201 579 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 LRRC20Q8TCA0 184 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 ST6GALNAC6Q969X2 333 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 SPOCK3Q9BQ16 436 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 GINS3Q9BRX5 216 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 CLEC7AQ9BXN2 247 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 NUP50Q9UKX7 468 aa10.9□□□□□ -0.67
HMGB1-202ENST00000339872 TET2Q6N021 2002 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-202ENST00000339872 LOC105371242A0A075B767 164 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 H0YJW9 148 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 ZNF137PP52743 207 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 TGIF2LXQ8IUE1 241 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 TNFRSF14Q92956 283 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 CCL19Q99731 98 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 ATP5SQ99766 215 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 SH3BGRL3Q9H299 93 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 MED9Q9NWA0 146 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 ZNF462Q96JM2 2506 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 FLNCQ14315 2725 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 COL12A1Q99715 3063 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 EPG5Q9HCE0 2579 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 ARHGAP32A7KAX9 2087 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 USP9XQ93008 2570 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-202ENST00000339872 ZNF705EA8MWA4 302 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-202ENST00000339872 SHOXO15266 292 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 FAM157CP0CG43 387 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 PRRX1P54821 245 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 TAGLNQ01995 201 aaKnown RBP10.89□□□□□ -0.67
HMGB1-202ENST00000339872 HLA-DRB5Q30154 266 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 AARDQ4LEZ3 155 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 OR5AN1Q8NGI8 311 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 CIB3Q96Q77 187 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-202ENST00000339872 NABP2Q9BQ15 211 aa10.89□□□□□ -0.67
HMGB1-202ENST00000339872 BARX1Q9HBU1 254 aaPredicted RBP10.89□□□□□ -0.67
HMGB1-202ENST00000339872 C15orf61A6NNL5 157 aa10.88□□□□□ -0.67
HMGB1-202ENST00000339872 ARF6P62330 175 aa10.88□□□□□ -0.67
HMGB1-202ENST00000339872 ARL16Q0P5N6 197 aa10.88□□□□□ -0.67
HMGB1-202ENST00000339872 POU2AF1Q16633 256 aa10.88□□□□□ -0.67
HMGB1-202ENST00000339872 HAPLN4Q86UW8 402 aa10.88□□□□□ -0.67
HMGB1-202ENST00000339872 HARBI1Q96MB7 349 aa10.88□□□□□ -0.67
HMGB1-202ENST00000339872 OR4C12Q96R67 309 aa10.88□□□□□ -0.67
HMGB1-202ENST00000339872 DFFBO76075 338 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 IGLV1-47P01700 117 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 IGHV4-39P01824 125 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 SEC11BP0C7V7 166 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 SPP1P10451 314 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 SULT1A2P50226 295 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 SPCS3P61009 180 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 HBG1P69891 147 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 HBG2P69892 147 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 AANATQ16613 207 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 OR8G2PQ6IF36 304 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 TMEM14EPQ6UXP3 125 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 LILRB2Q8N423 598 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 Q8N7P7 452 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 BPESC1Q9GZL8 116 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 SIRT7Q9NRC8 400 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 PLA2G2EQ9NZK7 142 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 STRAPQ9Y3F4 350 aaKnown RBP10.87□□□□□ -0.67
HMGB1-202ENST00000339872 MFSD2BA6NFX1 497 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 SRRM4A7MD48 611 aaKnown RBP10.87□□□□□ -0.67
HMGB1-202ENST00000339872 IGHV2-5P01817 119 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 SRSF1Q07955 248 aaKnown RBP eCLIP10.87□□□□□ -0.676e-14■■□□□ 12.8
HMGB1-202ENST00000339872 ZNF429Q86V71 674 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 PNKDQ8N490 385 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 BEND2Q8NDZ0 799 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 OSR1Q8TAX0 266 aaPredicted RBP10.87□□□□□ -0.67
HMGB1-202ENST00000339872 IGFBPL1Q8WX77 278 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 FAM210AQ96ND0 272 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 REG4Q9BYZ8 158 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 AKAP6Q13023 2319 aa10.87□□□□□ -0.67
HMGB1-202ENST00000339872 I3L521 148 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 SAA1P0DJI8 122 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-202ENST00000339872 ATP6V0CP27449 155 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 SLC25A24Q6NUK1 477 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 PDPNQ86YL7 162 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 STPG2Q8N412 459 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 OR52E5Q8NH55 327 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 LHX4Q969G2 390 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 FLYWCH2Q96CP2 140 aaKnown RBP10.86□□□□□ -0.67
HMGB1-202ENST00000339872 CLCC1Q96S66 551 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 TSNAXQ99598 290 aaKnown RBP10.86□□□□□ -0.67
HMGB1-202ENST00000339872 PCGF1Q9BSM1 259 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 TCF19Q9Y242 345 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 FOXA2Q9Y261 457 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-202ENST00000339872 WASHC3Q9Y3C0 194 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 SPTAN1Q13813 2472 aaKnown RBP10.86□□□□□ -0.67
HMGB1-202ENST00000339872 MYO18BQ8IUG5 2567 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 BUB1B-PAK6H3BSN5 160 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 M0R1W7 72 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 HOXA1P49639 335 aaPredicted RBP10.86□□□□□ -0.67
HMGB1-202ENST00000339872 RPS16P62249 146 aaKnown RBP10.86□□□□□ -0.67
HMGB1-202ENST00000339872 SLC38A11Q08AI6 406 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 TMEM177Q53S58 311 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 OR4P4Q8NGL7 312 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 AIFM2Q9BRQ8 373 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 TMEM14BQ9NUH8 114 aa10.86□□□□□ -0.67
HMGB1-202ENST00000339872 RFNGQ9Y644 331 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 332.4 ms