RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ACTL6BO94805 426 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 SAA1P0DJI8 122 aaPredicted RBP13.59□□□□□ -0.23
HDDC3-201ENST00000330334 IGKV1-13P0DP09 117 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 DYRK1AQ13627 763 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 TNXAQ16473 311 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 IDO2Q6ZQW0 420 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 KCTD9Q7L273 389 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 MMD2Q8IY49 270 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 SLC25A38Q96DW6 304 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 COA4Q9NYJ1 87 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 SIGLEC8Q9NYZ4 499 aa13.59□□□□□ -0.23
HDDC3-201ENST00000330334 TRBV9A0A0B4J1U6 114 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 J3QRK9 145 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 CLEC2LP0C7M8 214 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 RPL30P62888 115 aaKnown RBP13.58□□□□□ -0.24
HDDC3-201ENST00000330334 MXD1Q05195 221 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 TATDN3Q17R31 274 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 IDNKQ5T6J7 187 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 ZNF66Q6ZN08 573 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 HOGA1Q86XE5 327 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 TTC9CQ8N5M4 171 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 OR9G4Q8NGQ1 327 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 OR5H6Q8NGV6 325 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 VSTM2AQ8TAG5 236 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 DCUN1D5Q9BTE7 237 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 RNF167Q9H6Y7 350 aa13.58□□□□□ -0.24
HDDC3-201ENST00000330334 TRAV18A0A075B6X5 111 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 LOC100506127A0A0U1RQW1 187 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 ANKRD34BA5PLL1 514 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 FAM223BA6NKX1 122 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 TIMM50Q3ZCQ8 353 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 IL34Q6ZMJ4 242 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 ANKRD13BQ86YJ7 626 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 CROCCP3Q8IVE0 287 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 FAM223AQ8IWN6 122 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 MFSD4AQ8N468 514 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 BEST4Q8NFU0 473 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 OR4S2Q8NH73 311 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 ACOT12Q8WYK0 555 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 SNAPC3Q92966 411 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 ASCL2Q99929 193 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 DIABLOQ9NR28 239 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 SPATA2Q9UM82 520 aa13.57□□□□□ -0.24
HDDC3-201ENST00000330334 HUWE1Q7Z6Z7 4374 aaKnown RBP13.57□□□□□ -0.24
HDDC3-201ENST00000330334 A8MZ25 164 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 RBMXL2O75526 392 aaKnown RBP13.56□□□□□ -0.24
HDDC3-201ENST00000330334 OR2A4O95047 310 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 MAS1LP35410 378 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 BRWD1-AS2P59051 145 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 NEDD8Q15843 81 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 FAM209BQ5JX69 171 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 SLC25A42Q86VD7 318 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 SBSPONQ8IVN8 264 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 ZBTB34Q8NCN2 500 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 OR2A7Q96R45 310 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 AUNIPQ9H7T9 357 aa13.56□□□□□ -0.24
HDDC3-201ENST00000330334 MPPED1O15442 326 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 FRMD6-AS1P0C7T7 363 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 APELAP0DMC3 54 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 FCGR2CP31995 323 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 KIR2DS2P43631 304 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 CBX5P45973 191 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 SYNJ2BPP57105 145 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 ARPC4P59998 168 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 RHOGP84095 191 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 PUSL1Q8N0Z8 303 aaKnown RBP13.55□□□□□ -0.24
HDDC3-201ENST00000330334 Q8N1Y9 231 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 NECAP1Q8NC96 275 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 TMEM167AQ8TBQ9 72 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 TCTEX1D2Q8WW35 142 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 AIFM2Q9BRQ8 373 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 AKIP1Q9NQ31 210 aa13.55□□□□□ -0.24
HDDC3-201ENST00000330334 TRIM64CA6NLI5 447 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 H0Y980 276 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 KBTBD11O94819 623 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 HRASP01112 189 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 TRBV12-3P01733 135 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 ZNF45Q02386 682 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 ATP5G2Q06055 141 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 GVQW1Q8N7I0 195 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 GIMAP1Q8WWP7 306 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 RSRP1Q9BUV0 290 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 TAS2R8Q9NYW2 309 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 ZNF257Q9Y2Q1 563 aa13.54□□□□□ -0.24
HDDC3-201ENST00000330334 NPIPB5A8MRT5 1133 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 RBFOX2O43251 390 aaKnown RBP eCLIP13.53□□□□□ -0.24
HDDC3-201ENST00000330334 XRCC3O43542 346 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 AIREO43918 545 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 PPYP01298 95 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 CSN3P07498 182 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 RPEL1Q2QD12 228 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 KLK9Q2XQG4 91 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 OR2B11Q5JQS5 317 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 VKORC1L1Q8N0U8 176 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 OR13F1Q8NGS4 319 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 S100A16Q96FQ6 103 aaKnown RBP13.53□□□□□ -0.24
HDDC3-201ENST00000330334 SLC2A9Q9NRM0 540 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 KLK9Q9UKQ9 250 aa13.53□□□□□ -0.24
HDDC3-201ENST00000330334 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.52□□□□□ -0.25
HDDC3-201ENST00000330334 TEX22C9J3V5 150 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 172.2 ms