RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 PSG11Q9UQ72 335 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 DDTP30046 118 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 FCER1GP30273 86 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 ZNF648Q5T619 568 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 MBNL2Q5VZF2 373 aaKnown RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 HMGN2P46Q86SG4 172 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 A6NL46 340 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 MT-CO3P00414 261 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 CXCL2P19875 107 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 OTX1P32242 354 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 TMEM50BP56557 158 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 DEFB103AP81534 67 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 EBLN2Q6P2I7 272 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 C16orf82Q7Z2V1 217 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 NRSN2Q9GZP1 204 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 ATXN7L1Q9ULK2 861 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 IGKV3D-15A0A087WSY6 115 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PGPEP1LA6NFU8 196 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 CKS2P33552 79 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 ATOH7Q8N100 152 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 OR11H7Q8NGC8 314 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 REG1AP05451 166 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 B4GALT1P15291 398 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 VEGFBP49765 207 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 RPL11P62913 178 aaKnown RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 FAM24BQ8N5W8 94 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 OR5P3Q8WZ94 311 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 KCNE3Q9Y6H6 103 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PLCE1Q9P212 2302 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 A6NIN4 97 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 ZNF506Q5JVG8 444 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 HES3Q5TGS1 186 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 FAM78BQ5VT40 261 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 VSIG8P0DPA2 414 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 VPREB1P12018 145 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 RIPPLY3P57055 190 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PSG5Q15238 335 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 TMEM255AQ5JRV8 349 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 DPRXA6NFQ7 191 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 MOSPD3O75425 235 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 DEFB110Q30KQ9 67 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 ZNF660Q6AZW8 331 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 ZDBF2Q9HCK1 2354 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 LOC102723996A0A087X1L8 192 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 WNT1P04628 370 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 BHLHA15Q7RTS1 189 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 MYPOPQ86VE0 399 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 PPIAL4EA0A075B759 164 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PPIAL4DF5H284 164 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PPIAL4FP0DN26 164 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 ATP6V0CP27449 155 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 APOBEC3AP31941 199 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 CCL20P78556 96 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 FOXF1Q12946 379 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PPIAL4AQ9Y536 164 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 GAGE10A6NGK3 116 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 UPK3AO75631 287 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 TMEM91Q6ZNR0 172 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 SFTPA2Q8IWL1 248 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 SFTPA1Q8IWL2 248 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PHLDA3Q9Y5J5 127 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 TMEM229AB2RXF0 380 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 HYAL3O43820 417 aaPredicted RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 IGHV2-70P01814 119 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 EFNB2P52799 333 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 TRIP6Q15654 476 aaKnown RBP3.45□□□□□ -1.86
USH2A-201ENST00000307340 TBR1Q16650 682 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 SMIM3Q9BZL3 60 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 MTCH1Q9NZJ7 389 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PLA2G10O15496 165 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 PGFP49763 221 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 MEOX1P50221 254 aa3.45□□□□□ -1.86
USH2A-201ENST00000307340 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 F2RL2O00254 374 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 MAGEA5P43359 124 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 FHL5Q5TD97 284 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TUSC5Q8IXB3 177 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 TINAGL1Q9GZM7 467 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 C11orf68Q9H3H3 251 aaKnown RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 TRBV7-1A0A0A6YYK4 115 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 C1orf194Q5T5A4 169 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 OR10D4PQ8NGN7 298 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 PRSS27Q9BQR3 290 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 LMX1BO60663 402 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 SRSF10O75494 262 aaKnown RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 TIMP3P35625 211 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 LDLRAD3Q86YD5 345 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 PAXXQ9BUH6 204 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 HES7Q9BYE0 225 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 ETV2O00321 342 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 GAGE1Q13065 139 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 FGF11Q92914 225 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 C5orf66Q9H5L9 145 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 ING1Q9UK53 422 aaPredicted RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 SNRPNP63162 240 aaKnown RBP3.44□□□□□ -1.86
USH2A-201ENST00000307340 GFRALQ6UXV0 394 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 IGHV5-51A0A0C4DH38 117 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 OR13C6PQ8NH95 151 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 OR51B2Q9Y5P1 312 aa3.44□□□□□ -1.86
USH2A-201ENST00000307340 RCC1P18754 421 aaPredicted RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms