RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 DAB2P98082 770 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 XPCQ01831 940 aaPredicted RBP6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 GSTM4Q03013 218 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 FAAP100Q0VG06 881 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 ADGRE1Q14246 886 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 TMEM130Q8N3G9 435 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 C3orf58Q8NDZ4 430 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 FAM8A1Q9UBU6 413 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 TOP2AP11388 1531 aaKnown RBP6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 THOC2Q8NI27 1593 aaKnown RBP6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 EIF4EBP3O60516 100 aaPredicted RBP6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 EIF4BP23588 611 aaKnown RBP6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 NLRP12P59046 1061 aa6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 MBTPS1Q14703 1052 aa6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 DUOXA2Q1HG44 320 aa6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 TMC4Q7Z404 712 aa6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 GIPC2Q8TF65 315 aa6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 FOXD4L4Q8WXT5 416 aaPredicted RBP6.2□□□□□ -1.42
CKS1BP3-201ENST00000600888 F8W735 103 aaPredicted RBP6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 WISP1O95388 367 aa6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 USP17L7P0C7H9 530 aa6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 GATA4P43694 442 aa6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 ZNF157P51786 506 aaPredicted RBP6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 PSMD2Q13200 908 aa6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 ZNF326Q5BKZ1 582 aaKnown RBP6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 DDX54Q8TDD1 881 aaKnown RBP6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 WFDC12Q8WWY7 111 aa6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 FAM161BQ96MY7 647 aa6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 PRDM2Q13029 1718 aa6.19□□□□□ -1.42
CKS1BP3-201ENST00000600888 CADPSQ9ULU8 1353 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 PDS5BQ9NTI5 1447 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 ALX3O95076 343 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 IREB2P48200 963 aaKnown RBP6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 GPAT2Q6NUI2 795 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 KIAA1211Q6ZU35 1233 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 ACAD11Q709F0 780 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 TXNRD3Q86VQ6 643 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 UBASH3BQ8TF42 649 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 NRSN2Q9GZP1 204 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 AKTIPQ9H8T0 292 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 TMEM39AQ9NV64 488 aa6.18□□□□□ -1.42
CKS1BP3-201ENST00000600888 LOC100289279A0A1B0GTE1 492 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 MSTNO14793 375 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 IGHA1P01876 353 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 CYP11A1P05108 521 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 ZNF16P17020 682 aaPredicted RBP6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 NOS3P29474 1203 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 PPP2R3AQ06190 1150 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 AGGF1Q8N302 714 aaeCLIP6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 ANKRD24Q8TF21 1146 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 SPOCK3Q9BQ16 436 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 TRIM56Q9BRZ2 755 aaKnown RBP6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 USP26Q9BXU7 913 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 GPN3Q9UHW5 284 aaPredicted RBP6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 PPM1HQ9ULR3 514 aa6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 CCDC9Q9Y3X0 531 aaKnown RBP6.17□□□□□ -1.42
CKS1BP3-201ENST00000600888 SORBS3O60504 671 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 DLGAP3O95886 979 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 PROCP04070 461 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 MAOBP27338 520 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 POU4F3Q15319 338 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 TPTE2Q6XPS3 522 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 RGS22Q8NE09 1264 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 NECAB3Q96P71 396 aaPredicted RBP6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 CEP44Q9C0F1 390 aa6.16□□□□□ -1.42
CKS1BP3-201ENST00000600888 CFTRP13569 1480 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 RBM47A0AV96 593 aaKnown RBP6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 MEGF11A6BM72 1044 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 FBXO24O75426 580 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 CTSHP09668 335 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 AP3B2Q13367 1082 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 EXOSC6Q5RKV6 272 aaKnown RBP6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 RUSC1Q9BVN2 902 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 RNF208Q9H0X6 261 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 MRS2Q9HD23 443 aa6.15□□□□□ -1.42
CKS1BP3-201ENST00000600888 ENC1O14682 589 aa6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 ECEL1O95672 775 aa6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 CTSBP07858 339 aa6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 Q6ZS46 218 aa6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 DZIP1LQ8IYY4 767 aaKnown RBP6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 CORO1BQ9BR76 489 aa6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 SSBP4Q9BWG4 385 aaPredicted RBP6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 PODXL2Q9NZ53 605 aa6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 TTF2Q9UNY4 1162 aaKnown RBP6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 WDR62O43379 1518 aa6.14□□□□□ -1.43
CKS1BP3-201ENST00000600888 GLB1P16278 677 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 NME2P22392 152 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 ARNTP27540 789 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 ITGAEP38570 1179 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 DOC2BQ14184 412 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 TAF1CQ15572 869 aaPredicted RBP6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 MEI1Q5TIA1 1274 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 NUTM2GQ5VZR2 741 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 SV2BQ7L1I2 683 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 SULF2Q8IWU5 870 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 STK35Q8TDR2 534 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 MEGF10Q96KG7 1140 aa6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 UBL7Q96S82 380 aaPredicted RBP6.13□□□□□ -1.43
CKS1BP3-201ENST00000600888 TMPRSS13Q9BYE2 586 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms