RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SPDYE5A6NIY4 337 aa12.92□□□□□ -0.34
TRIM28-210ENST00000597618 CETPP11597 493 aa12.92□□□□□ -0.34
TRIM28-210ENST00000597618 MFSD14BQ5SR56 506 aa12.92□□□□□ -0.34
TRIM28-210ENST00000597618 CDAN1Q8IWY9 1227 aa12.92□□□□□ -0.34
TRIM28-210ENST00000597618 LINS1Q8NG48 757 aa12.92□□□□□ -0.34
TRIM28-210ENST00000597618 ARHGAP39Q9C0H5 1083 aa12.92□□□□□ -0.34
TRIM28-210ENST00000597618 TDRD3Q9H7E2 651 aaKnown RBP12.92□□□□□ -0.34
TRIM28-210ENST00000597618 TTF2Q9UNY4 1162 aaKnown RBP12.92□□□□□ -0.34
TRIM28-210ENST00000597618 COL6A3P12111 3177 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 SLC4A2P04920 1241 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 FLIIQ13045 1269 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 G2E3Q7L622 706 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 DZIP1LQ8IYY4 767 aaKnown RBP12.91□□□□□ -0.34
TRIM28-210ENST00000597618 NKX2-3Q8TAU0 364 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 DPF3Q92784 378 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 TMEM39BQ9GZU3 492 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 RBM27Q9P2N5 1060 aaKnown RBP12.91□□□□□ -0.34
TRIM28-210ENST00000597618 CHMP3Q9Y3E7 222 aa12.91□□□□□ -0.34
TRIM28-210ENST00000597618 TCP10L2B9ZVM9 353 aa12.9□□□□□ -0.34
TRIM28-210ENST00000597618 FKBP5Q13451 457 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-210ENST00000597618 SNAPC2Q13487 334 aa12.9□□□□□ -0.34
TRIM28-210ENST00000597618 TWISTNBQ3B726 338 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-210ENST00000597618 ERO1BQ86YB8 467 aa12.9□□□□□ -0.34
TRIM28-210ENST00000597618 DNAAF4Q8WXU2 420 aa12.9□□□□□ -0.34
TRIM28-210ENST00000597618 TSR2Q969E8 191 aaKnown RBP12.9□□□□□ -0.34
TRIM28-210ENST00000597618 SHISA4Q96DD7 197 aa12.9□□□□□ -0.34
TRIM28-210ENST00000597618 HTATIP2Q9BUP3 242 aa12.9□□□□□ -0.34
TRIM28-210ENST00000597618 BTBD19C9JJ37 291 aa12.89□□□□□ -0.35
TRIM28-210ENST00000597618 CRKP46108 304 aa12.89□□□□□ -0.35
TRIM28-210ENST00000597618 TAF7LQ5H9L4 462 aa12.89□□□□□ -0.35
TRIM28-210ENST00000597618 TDRD7Q8NHU6 1098 aaKnown RBP12.89□□□□□ -0.35
TRIM28-210ENST00000597618 HOOK2Q96ED9 719 aa12.89□□□□□ -0.35
TRIM28-210ENST00000597618 SNCAIPQ9Y6H5 919 aa12.89□□□□□ -0.35
TRIM28-210ENST00000597618 A0A1B0GUL6 1792 aa12.89□□□□□ -0.35
TRIM28-210ENST00000597618 ARAP2Q8WZ64 1704 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 DLL1O00548 723 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 PLIN1O60240 522 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 HOXD10P28358 340 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 FOXO4P98177 505 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 PPIL2Q13356 520 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 CCDC57Q2TAC2 916 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 LDHAL6AQ6ZMR3 332 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 WRNIP1Q96S55 665 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 CNNM1Q9NRU3 951 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 SRRDQ9UH36 339 aa12.88□□□□□ -0.35
TRIM28-210ENST00000597618 IRF6O14896 467 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 HIBADHP31937 336 aaKnown RBP12.87□□□□□ -0.35
TRIM28-210ENST00000597618 GJA8P48165 433 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 UBE4AQ14139 1066 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 MTFR1Q15390 333 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 C17orf99Q6UX52 265 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 UBE2Q1Q7Z7E8 422 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 SLC17A8Q8NDX2 589 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 RAET1EQ8TD07 263 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 PRO3102Q9H379 93 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 NR2E3Q9Y5X4 410 aa12.87□□□□□ -0.35
TRIM28-210ENST00000597618 A0A1W2PPC1 479 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 GJB1P08034 283 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 GRK4P32298 578 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 PSMC4P43686 418 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 GYG1P46976 350 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 HDLBPQ00341 1268 aaKnown RBP12.86□□□□□ -0.35
TRIM28-210ENST00000597618 DDX10Q13206 875 aaKnown RBP12.86□□□□□ -0.35
TRIM28-210ENST00000597618 LMBR1LQ6UX01 489 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 TRIM47Q96LD4 638 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 TMOD2Q9NZR1 351 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 RIPOR2Q9Y4F9 1068 aa12.86□□□□□ -0.35
TRIM28-210ENST00000597618 ZSWIM8A7E2V4 1837 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 RPAP1Q9BWH6 1393 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-210ENST00000597618 FMNL1O95466 1100 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-210ENST00000597618 CCL5P13501 91 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 OSBPP22059 807 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 PPATQ06203 517 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 DCAF15Q66K64 600 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 ANKRD23Q86SG2 305 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 FAM83AQ86UY5 434 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 TBC1D22AQ8WUA7 517 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 ZKSCAN4Q969J2 545 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-210ENST00000597618 TEKT1Q969V4 418 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 ZNF594Q96JF6 807 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-210ENST00000597618 FAM84BQ96KN1 310 aaPredicted RBP12.85□□□□□ -0.35
TRIM28-210ENST00000597618 CPA4Q9UI42 421 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 MYPNQ86TC9 1320 aa12.85□□□□□ -0.35
TRIM28-210ENST00000597618 ECM2O94769 699 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-210ENST00000597618 CTGFP29279 349 aa12.84□□□□□ -0.35
TRIM28-210ENST00000597618 CACNB3P54284 484 aa12.84□□□□□ -0.35
TRIM28-210ENST00000597618 UBXN2AP68543 259 aa12.84□□□□□ -0.35
TRIM28-210ENST00000597618 FKBP1CQ5VVH2 108 aa12.84□□□□□ -0.35
TRIM28-210ENST00000597618 VPS37DQ86XT2 251 aa12.84□□□□□ -0.35
TRIM28-210ENST00000597618 RNF208Q9H0X6 261 aa12.84□□□□□ -0.35
TRIM28-210ENST00000597618 BIN2Q9UBW5 565 aaPredicted RBP12.84□□□□□ -0.35
TRIM28-210ENST00000597618 ADGRA2Q96PE1 1338 aa12.84□□□□□ -0.35
TRIM28-210ENST00000597618 PDHXO00330 501 aa12.83□□□□□ -0.36
TRIM28-210ENST00000597618 ZBTB7BO15156 539 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-210ENST00000597618 FARP2O94887 1054 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-210ENST00000597618 CCDC27Q2M243 656 aa12.83□□□□□ -0.36
TRIM28-210ENST00000597618 EPHA10Q5JZY3 1008 aa12.83□□□□□ -0.36
TRIM28-210ENST00000597618 BEND3Q5T5X7 828 aa12.83□□□□□ -0.36
TRIM28-210ENST00000597618 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.83□□□□□ -0.36
TRIM28-210ENST00000597618 SLAIN1Q8ND83 568 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms