RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 KIAA0232Q92628 1395 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 ADGRB2O60241 1585 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 ADAMTS12P58397 1594 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 TLR3O15455 904 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 TMOD1P28289 359 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 MCM5P33992 734 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 ZNF157P51786 506 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 RARSP54136 660 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 HAND2P61296 217 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 PDE4DQ08499 809 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 MFSD14CQ5VZR4 134 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 CACNA2D4Q7Z3S7 1137 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 KRT26Q7Z3Y9 468 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 HOOK3Q86VS8 718 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 MAGEB6Q8N7X4 407 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 MIGA1Q8NAN2 632 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 DPF3Q92784 378 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 ADD3Q9UEY8 706 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 SERPINC1P01008 464 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 CCDC172P0C7W6 258 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 MARCKSP29966 332 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 CRKLP46109 303 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 CCDC40Q4G0X9 1142 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 C1orf228Q6PIY5 440 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 MICU3Q86XE3 530 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 CCDC112Q8NEF3 446 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 TAF4BQ92750 862 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 ALS2CR12Q96Q35 445 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 ZHX1Q9UKY1 873 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 ADAMTS7Q9UKP4 1686 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 RGPD1P0DJD0 1748 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 UGGT2Q9NYU1 1516 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 SOS1Q07889 1333 aaPredicted RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 WDR17Q8IZU2 1322 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 PLEKHG3A1L390 1219 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 GOLGA6L3A6NEY3 463 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 BMP15O95972 392 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 METAP2P50579 478 aaKnown RBP eCLIP3.35□□□□□ -1.871e-11■■■□□ 15
SMCHD1-203ENST00000577880 SMTNP53814 917 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 PRPF40BQ6NWY9 871 aaKnown RBP3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 SLC17A8Q8NDX2 589 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 TRIM5Q9C035 493 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 CEP83Q9Y592 693 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 USP16Q9Y5T5 823 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 SBNO1A3KN83 1393 aa3.35□□□□□ -1.87
SMCHD1-203ENST00000577880 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 SYCP2Q9BX26 1530 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 RIOK3O14730 519 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 FLOT1O75955 427 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 FAM13AO94988 1023 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 USP17L8P0C7I0 530 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 FBLN1P23142 703 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 GBP2P32456 591 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 SNX16P57768 344 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 SREBF2Q12772 1141 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 AXDND1Q5T1B0 1012 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 KRT79Q5XKE5 535 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 DPH6Q7L8W6 267 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 HS2ST1Q7LGA3 356 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 GPCPD1Q9NPB8 672 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 PRDM5Q9NQX1 630 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 HAUS2Q9NVX0 235 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 BABAM1Q9NWV8 329 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 PKD2L1Q9P0L9 805 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 TRPC6Q9Y210 931 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 LEMD3Q9Y2U8 911 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 CD2APQ9Y5K6 639 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 XDHP47989 1333 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 MROH5Q6ZUA9 1318 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 RTL9Q8NET4 1388 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 CAMSAP1Q5T5Y3 1602 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ZBTB43O43298 467 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 RPS6KA4O75676 772 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 LETM1O95202 739 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 SLU7O95391 586 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ALAS1P13196 640 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ELF1P32519 619 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 IL6STP40189 918 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 STRN3Q13033 797 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 NFKBIBQ15653 356 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 RTN1Q16799 776 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 HS1BP3Q53T59 392 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 APOBEC3FQ8IUX4 373 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 CPLX3Q8WVH0 158 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 LPIN2Q92539 896 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 RNF34Q969K3 372 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 SLC26A6Q9BXS9 759 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ACBD3Q9H3P7 528 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ZFYVE28Q9HCC9 887 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.34□□□□□ -1.871e-7■■■■□ 20.1
SMCHD1-203ENST00000577880 ORC3Q9UBD5 711 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 MYO3BQ8WXR4 1341 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ABCC1P33527 1531 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 CLRN2A0PK11 232 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 MACROD2A1Z1Q3 448 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 EYA2O00167 538 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 TNPO2O14787 897 aaKnown RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 FIBPO43427 364 aa3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 VEGFAP15692 232 aaPredicted RBP3.34□□□□□ -1.87
SMCHD1-203ENST00000577880 ZSCAN20P17040 1043 aaPredicted RBP3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms