RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 CCDC144CPQ8IYA2 1237 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 NKX2-3Q8TAU0 364 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 POLR3EQ9NVU0 708 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 ANO10Q9NW15 660 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 PDE8BO95263 885 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 POLR3DP05423 398 aaPredicted RBP26.57■■□□□ 1.84
VPS53-211ENST00000571805 GJB4Q9NTQ9 266 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 DENND2AQ9ULE3 1009 aa26.57■■□□□ 1.84
VPS53-211ENST00000571805 A0A087WWV3 80 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 YEATS4O95619 227 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 UBE3CQ15386 1083 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 BRAPQ7Z569 592 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 MRFAP1L1Q96HT8 127 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 BCL9O00512 1426 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 NUP98P52948 1817 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP26.56■■□□□ 1.84
VPS53-211ENST00000571805 A0A1B0GVL5 298 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 CPLX1O14810 134 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 MYSM1Q5VVJ2 828 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 TBC1D10CQ8IV04 446 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 CACTINQ8WUQ7 758 aaKnown RBP26.56■■□□□ 1.84
VPS53-211ENST00000571805 TSC1Q92574 1164 aa26.56■■□□□ 1.84
VPS53-211ENST00000571805 NDUFA8P51970 172 aa26.55■■□□□ 1.84
VPS53-211ENST00000571805 KCNG4Q8TDN1 519 aa26.55■■□□□ 1.84
VPS53-211ENST00000571805 TRMT112Q9UI30 125 aaKnown RBP26.55■■□□□ 1.84
VPS53-211ENST00000571805 ZBTB1Q9Y2K1 713 aa26.55■■□□□ 1.84
VPS53-211ENST00000571805 KIF28PB7ZC32 967 aa26.55■■□□□ 1.84
VPS53-211ENST00000571805 STK38Q15208 465 aa26.55■■□□□ 1.84
VPS53-211ENST00000571805 CYB5R4Q7L1T6 521 aa26.55■■□□□ 1.84
VPS53-211ENST00000571805 CCDC102BQ68D86 513 aa26.54■■□□□ 1.84
VPS53-211ENST00000571805 RGS22Q8NE09 1264 aa26.54■■□□□ 1.84
VPS53-211ENST00000571805 ERCC4Q92889 916 aaPredicted RBP26.54■■□□□ 1.84
VPS53-211ENST00000571805 BTG4Q9NY30 223 aa26.54■■□□□ 1.84
VPS53-211ENST00000571805 NHSL1Q5SYE7 1610 aa26.54■■□□□ 1.84
VPS53-211ENST00000571805 PDE8AO60658 829 aa26.54■■□□□ 1.84
VPS53-211ENST00000571805 ARID4AP29374 1257 aaPredicted RBP26.54■■□□□ 1.84
VPS53-211ENST00000571805 PHKA1P46020 1223 aa26.54■■□□□ 1.84
VPS53-211ENST00000571805 KIF23Q02241 960 aaPredicted RBP26.54■■□□□ 1.84
VPS53-211ENST00000571805 ANGEL1Q9UNK9 670 aaKnown RBP26.54■■□□□ 1.84
VPS53-211ENST00000571805 DISP2A7MBM2 1401 aa26.53■■□□□ 1.84
VPS53-211ENST00000571805 ZNF532Q9HCE3 1301 aa26.53■■□□□ 1.84
VPS53-211ENST00000571805 SPTLC2O15270 562 aa26.53■■□□□ 1.84
VPS53-211ENST00000571805 TRDNQ13061 729 aa26.53■■□□□ 1.84
VPS53-211ENST00000571805 NEDD4P46934 1319 aa26.53■■□□□ 1.84
VPS53-211ENST00000571805 TCRBV5S4A2TA0A5A2 114 aa26.53■■□□□ 1.84
VPS53-211ENST00000571805 IDH1O75874 414 aaKnown RBP26.53■■□□□ 1.84
VPS53-211ENST00000571805 SF3A1Q15459 793 aaKnown RBP26.53■■□□□ 1.84
VPS53-211ENST00000571805 ZNF710Q8N1W2 664 aa26.53■■□□□ 1.84
VPS53-211ENST00000571805 ZMYM6O95789 1325 aa26.52■■□□□ 1.84
VPS53-211ENST00000571805 BECN2A8MW95 431 aa26.52■■□□□ 1.84
VPS53-211ENST00000571805 PDE6AP16499 860 aa26.52■■□□□ 1.84
VPS53-211ENST00000571805 SH2B2O14492 632 aaPredicted RBP26.51■■□□□ 1.84
VPS53-211ENST00000571805 CEP57L1Q8IYX8 460 aa26.51■■□□□ 1.84
VPS53-211ENST00000571805 SDF4Q9BRK5 362 aa26.51■■□□□ 1.84
VPS53-211ENST00000571805 ERVV-1B6SEH8 477 aa26.51■■□□□ 1.83
VPS53-211ENST00000571805 FGFR2P21802 821 aa26.51■■□□□ 1.83
VPS53-211ENST00000571805 WWC3Q9ULE0 1092 aa26.51■■□□□ 1.83
VPS53-211ENST00000571805 UBN2Q6ZU65 1347 aa26.51■■□□□ 1.83
VPS53-211ENST00000571805 RIOK3O14730 519 aaKnown RBP26.5■■□□□ 1.83
VPS53-211ENST00000571805 UQCRFS1P1P0C7P4 283 aa26.5■■□□□ 1.83
VPS53-211ENST00000571805 CHAF1AQ13111 956 aaPredicted RBP26.5■■□□□ 1.83
VPS53-211ENST00000571805 AXDND1Q5T1B0 1012 aaPredicted RBP26.5■■□□□ 1.83
VPS53-211ENST00000571805 ANO1Q5XXA6 986 aa26.5■■□□□ 1.83
VPS53-211ENST00000571805 KIAA1468Q9P260 1216 aa26.5■■□□□ 1.83
VPS53-211ENST00000571805 APPP05067 770 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 SYNE3Q6ZMZ3 975 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 LRRC8AQ8IWT6 810 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 ZNF34Q8IZ26 560 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 STRBPQ96SI9 672 aaKnown RBP26.49■■□□□ 1.83
VPS53-211ENST00000571805 LRP5O75197 1615 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 LPIN2Q92539 896 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 SENP2Q9HC62 589 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 TBC1D2BQ9UPU7 963 aa26.49■■□□□ 1.83
VPS53-211ENST00000571805 PUM3Q15397 648 aaKnown RBP26.48■■□□□ 1.83
VPS53-211ENST00000571805 DZIP3Q86Y13 1208 aaKnown RBP26.48■■□□□ 1.83
VPS53-211ENST00000571805 AOPEPQ8N6M6 819 aa26.48■■□□□ 1.83
VPS53-211ENST00000571805 NAT10Q9H0A0 1025 aaKnown RBP26.48■■□□□ 1.83
VPS53-211ENST00000571805 KAT6BQ8WYB5 2073 aa26.48■■□□□ 1.83
VPS53-211ENST00000571805 ARAP2Q8WZ64 1704 aa26.48■■□□□ 1.83
VPS53-211ENST00000571805 IL6STP40189 918 aaPredicted RBP26.48■■□□□ 1.83
VPS53-211ENST00000571805 METAP2P50579 478 aaKnown RBP eCLIP26.48■■□□□ 1.83
VPS53-211ENST00000571805 ALX1Q15699 326 aa26.48■■□□□ 1.83
VPS53-211ENST00000571805 APOA5Q6Q788 366 aa26.48■■□□□ 1.83
VPS53-211ENST00000571805 IGDCC4Q8TDY8 1250 aa26.48■■□□□ 1.83
VPS53-211ENST00000571805 AIFM3Q96NN9 605 aa26.48■■□□□ 1.83
VPS53-211ENST00000571805 SLIT2O94813 1529 aa26.47■■□□□ 1.83
VPS53-211ENST00000571805 B4E1Z4 1266 aa26.47■■□□□ 1.83
VPS53-211ENST00000571805 HELBQ8NG08 1087 aaPredicted RBP26.47■■□□□ 1.83
VPS53-211ENST00000571805 MROH5Q6ZUA9 1318 aa26.47■■□□□ 1.83
VPS53-211ENST00000571805 CDC27P30260 824 aa26.47■■□□□ 1.83
VPS53-211ENST00000571805 ARID5BQ14865 1188 aa26.47■■□□□ 1.83
VPS53-211ENST00000571805 ALG1Q9BT22 464 aa26.47■■□□□ 1.83
VPS53-211ENST00000571805 FAM177BA6PVY3 158 aa26.46■■□□□ 1.83
VPS53-211ENST00000571805 CMA1P23946 247 aa26.46■■□□□ 1.83
VPS53-211ENST00000571805 SLC39A14Q15043 492 aa26.46■■□□□ 1.83
VPS53-211ENST00000571805 TMEM87BQ96K49 555 aa26.46■■□□□ 1.83
VPS53-211ENST00000571805 BCL2L12Q9HB09 334 aa26.46■■□□□ 1.83
VPS53-211ENST00000571805 ZNF202O95125 648 aa26.46■■□□□ 1.83
VPS53-211ENST00000571805 BPIFA3Q9BQP9 254 aa26.46■■□□□ 1.83
VPS53-211ENST00000571805 NEMFO60524 1076 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms