RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SGPL1O95470 568 aa23.33■■□□□ 1.33
CLK3-227ENST00000570296 RBM5P52756 815 aaKnown RBP eCLIP23.33■■□□□ 1.33
CLK3-227ENST00000570296 SNAPC2Q13487 334 aa23.33■■□□□ 1.33
CLK3-227ENST00000570296 GDF15Q99988 308 aa23.33■■□□□ 1.33
CLK3-227ENST00000570296 C15orf52Q6ZUT6 534 aaKnown RBP23.32■■□□□ 1.32
CLK3-227ENST00000570296 Q7L0L9 218 aa23.32■■□□□ 1.32
CLK3-227ENST00000570296 ZNF70Q9UC06 446 aaPredicted RBP23.32■■□□□ 1.32
CLK3-227ENST00000570296 FMNL1O95466 1100 aaPredicted RBP23.31■■□□□ 1.32
CLK3-227ENST00000570296 LRIT3Q3SXY7 679 aa23.31■■□□□ 1.32
CLK3-227ENST00000570296 ERO1BQ86YB8 467 aa23.31■■□□□ 1.32
CLK3-227ENST00000570296 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.31■■□□□ 1.32
CLK3-227ENST00000570296 SLAIN1Q8ND83 568 aa23.31■■□□□ 1.32
CLK3-227ENST00000570296 IRS2Q9Y4H2 1338 aa23.31■■□□□ 1.32
CLK3-227ENST00000570296 IL1R1P14778 569 aa23.3■■□□□ 1.32
CLK3-227ENST00000570296 CDAN1Q8IWY9 1227 aa23.3■■□□□ 1.32
CLK3-227ENST00000570296 MPHOSPH8Q99549 860 aa23.3■■□□□ 1.32
CLK3-227ENST00000570296 MGAMO43451 1857 aa23.29■■□□□ 1.32
CLK3-227ENST00000570296 ECM2O94769 699 aaPredicted RBP23.29■■□□□ 1.32
CLK3-227ENST00000570296 DDX58O95786 925 aaKnown RBP23.29■■□□□ 1.32
CLK3-227ENST00000570296 UNC93B1Q9H1C4 597 aa23.29■■□□□ 1.32
CLK3-227ENST00000570296 CPA4Q9UI42 421 aa23.29■■□□□ 1.32
CLK3-227ENST00000570296 SNCAIPQ9Y6H5 919 aa23.29■■□□□ 1.32
CLK3-227ENST00000570296 SPTBN5Q9NRC6 3674 aaKnown RBP23.29■■□□□ 1.32
CLK3-227ENST00000570296 IRF6O14896 467 aa23.28■■□□□ 1.32
CLK3-227ENST00000570296 PPIL2Q13356 520 aa23.28■■□□□ 1.32
CLK3-227ENST00000570296 ZNF804AQ7Z570 1209 aa23.28■■□□□ 1.32
CLK3-227ENST00000570296 TNNI2P48788 182 aa23.27■■□□□ 1.32
CLK3-227ENST00000570296 CHRNDQ07001 517 aa23.27■■□□□ 1.32
CLK3-227ENST00000570296 TMEM39BQ9GZU3 492 aa23.27■■□□□ 1.32
CLK3-227ENST00000570296 SERPINA10Q9UK55 444 aa23.27■■□□□ 1.32
CLK3-227ENST00000570296 ADGRA2Q96PE1 1338 aa23.27■■□□□ 1.32
CLK3-227ENST00000570296 A0A1B0GUL6 1792 aa23.27■■□□□ 1.32
CLK3-227ENST00000570296 ITGA6P23229 1130 aa23.26■■□□□ 1.31
CLK3-227ENST00000570296 PRKCZQ05513 592 aa23.26■■□□□ 1.31
CLK3-227ENST00000570296 NEUROD2Q15784 382 aa23.26■■□□□ 1.31
CLK3-227ENST00000570296 ANKRD23Q86SG2 305 aa23.26■■□□□ 1.31
CLK3-227ENST00000570296 TDRD3Q9H7E2 651 aaKnown RBP23.26■■□□□ 1.31
CLK3-227ENST00000570296 TRIM35Q9UPQ4 493 aa23.26■■□□□ 1.31
CLK3-227ENST00000570296 TFRCP02786 760 aaKnown RBP23.25■■□□□ 1.31
CLK3-227ENST00000570296 IGKV5-2P06315 115 aa23.25■■□□□ 1.31
CLK3-227ENST00000570296 TTC28Q96AY4 2481 aa23.25■■□□□ 1.31
CLK3-227ENST00000570296 TCP10L2B9ZVM9 353 aa23.24■■□□□ 1.31
CLK3-227ENST00000570296 FCGRTP55899 365 aa23.24■■□□□ 1.31
CLK3-227ENST00000570296 MAP3K2Q9Y2U5 619 aa23.24■■□□□ 1.31
CLK3-227ENST00000570296 BCAMP50895 628 aa23.23■■□□□ 1.31
CLK3-227ENST00000570296 DZIP1LQ8IYY4 767 aaKnown RBP23.23■■□□□ 1.31
CLK3-227ENST00000570296 TDHQ8IZJ6 230 aa23.23■■□□□ 1.31
CLK3-227ENST00000570296 WRNIP1Q96S55 665 aa23.23■■□□□ 1.31
CLK3-227ENST00000570296 PDHXO00330 501 aa23.22■■□□□ 1.31
CLK3-227ENST00000570296 PPATQ06203 517 aa23.22■■□□□ 1.31
CLK3-227ENST00000570296 PLA2G12BQ9BX93 195 aa23.22■■□□□ 1.31
CLK3-227ENST00000570296 CRISPLD2Q9H0B8 497 aa23.22■■□□□ 1.31
CLK3-227ENST00000570296 PRDM6Q9NQX0 595 aa23.22■■□□□ 1.31
CLK3-227ENST00000570296 JAG2Q9Y219 1238 aa23.22■■□□□ 1.31
CLK3-227ENST00000570296 FAM205AQ6ZU69 1335 aa23.22■■□□□ 1.31
CLK3-227ENST00000570296 SNAP23O00161 211 aa23.21■■□□□ 1.31
CLK3-227ENST00000570296 NEXNQ0ZGT2 675 aa23.21■■□□□ 1.31
CLK3-227ENST00000570296 NECAB2Q7Z6G3 386 aa23.21■■□□□ 1.31
CLK3-227ENST00000570296 CCER1Q8TC90 406 aaPredicted RBP23.21■■□□□ 1.31
CLK3-227ENST00000570296 ZKSCAN4Q969J2 545 aaPredicted RBP23.21■■□□□ 1.31
CLK3-227ENST00000570296 HOOK2Q96ED9 719 aa23.21■■□□□ 1.31
CLK3-227ENST00000570296 PAWRQ96IZ0 340 aaKnown RBP23.21■■□□□ 1.31
CLK3-227ENST00000570296 DEFB118Q96PH6 123 aa23.21■■□□□ 1.31
CLK3-227ENST00000570296 MBIPQ9NS73 344 aa23.21■■□□□ 1.31
CLK3-227ENST00000570296 TTF2Q9UNY4 1162 aaKnown RBP23.21■■□□□ 1.31
CLK3-227ENST00000570296 RPTORQ8N122 1335 aa23.2■■□□□ 1.3
CLK3-227ENST00000570296 H7C1W4 665 aa23.2■■□□□ 1.3
CLK3-227ENST00000570296 ADCY3O60266 1144 aa23.2■■□□□ 1.3
CLK3-227ENST00000570296 KSR2Q6VAB6 950 aa23.2■■□□□ 1.3
CLK3-227ENST00000570296 UBE3BQ7Z3V4 1068 aa23.2■■□□□ 1.3
CLK3-227ENST00000570296 C7orf61Q8IZ16 206 aa23.2■■□□□ 1.3
CLK3-227ENST00000570296 PXYLP1Q8TE99 480 aa23.2■■□□□ 1.3
CLK3-227ENST00000570296 PAK6Q9NQU5 681 aaPredicted RBP23.2■■□□□ 1.3
CLK3-227ENST00000570296 TAF5LO75529 589 aa23.19■■□□□ 1.3
CLK3-227ENST00000570296 INHAP05111 366 aa23.19■■□□□ 1.3
CLK3-227ENST00000570296 BCRP11274 1271 aa23.19■■□□□ 1.3
CLK3-227ENST00000570296 MFSD14BQ5SR56 506 aa23.19■■□□□ 1.3
CLK3-227ENST00000570296 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.19■■□□□ 1.3
CLK3-227ENST00000570296 CHMP4AQ9BY43 222 aa23.19■■□□□ 1.3
CLK3-227ENST00000570296 ZMYND8Q9ULU4 1186 aaPredicted RBP23.19■■□□□ 1.3
CLK3-227ENST00000570296 CSF1RP07333 972 aa23.18■■□□□ 1.3
CLK3-227ENST00000570296 PARK7Q99497 189 aaKnown RBP23.18■■□□□ 1.3
CLK3-227ENST00000570296 GABRQQ9UN88 632 aa23.18■■□□□ 1.3
CLK3-227ENST00000570296 PI4KAP2A4QPH2 592 aa23.17■■□□□ 1.3
CLK3-227ENST00000570296 NEURL1BA8MQ27 555 aa23.17■■□□□ 1.3
CLK3-227ENST00000570296 MAGEA10P43363 369 aaPredicted RBP23.17■■□□□ 1.3
CLK3-227ENST00000570296 CRKP46108 304 aa23.17■■□□□ 1.3
CLK3-227ENST00000570296 PI4KAP1Q8N8J0 262 aa23.17■■□□□ 1.3
CLK3-227ENST00000570296 KCNH4Q9UQ05 1017 aa23.17■■□□□ 1.3
CLK3-227ENST00000570296 CWF19L2Q2TBE0 894 aaKnown RBP23.16■■□□□ 1.3
CLK3-227ENST00000570296 ANKLE1Q8NAG6 615 aa23.16■■□□□ 1.3
CLK3-227ENST00000570296 ANKRD18BA2A2Z9 1011 aa23.15■■□□□ 1.3
CLK3-227ENST00000570296 ZNF853P0CG23 659 aa23.15■■□□□ 1.3
CLK3-227ENST00000570296 ELNP15502 786 aa23.15■■□□□ 1.3
CLK3-227ENST00000570296 IRF5Q13568 498 aa23.15■■□□□ 1.3
CLK3-227ENST00000570296 CCDC30Q5VVM6 783 aa23.15■■□□□ 1.3
CLK3-227ENST00000570296 DCAF15Q66K64 600 aa23.15■■□□□ 1.3
CLK3-227ENST00000570296 FAM109BQ6ICB4 259 aaPredicted RBP23.15■■□□□ 1.3
CLK3-227ENST00000570296 DIS3LQ8TF46 1054 aaKnown RBP23.15■■□□□ 1.3
CLK3-227ENST00000570296 LAMA2P24043 3122 aaKnown RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms