RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 RGPD4Q7Z3J3 1758 aa15.51■□□□□ 0.07
VPS4A-204ENST00000566354 JAK2O60674 1132 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 CCDC57Q2TAC2 916 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 ERFEQ4G0M1 354 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 Q6ZUG5 572 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 EDC3Q96F86 508 aaKnown RBP15.5■□□□□ 0.07
VPS4A-204ENST00000566354 CAMKK2Q96RR4 588 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 GYS1P13807 737 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 MCMDC2Q4G0Z9 681 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 SAMD1Q6SPF0 538 aaPredicted RBP15.5■□□□□ 0.07
VPS4A-204ENST00000566354 LLPHQ9BRT6 129 aaKnown RBP15.5■□□□□ 0.07
VPS4A-204ENST00000566354 COL24A1Q17RW2 1714 aa15.5■□□□□ 0.07
VPS4A-204ENST00000566354 CTIFO43310 598 aaKnown RBP15.49■□□□□ 0.07
VPS4A-204ENST00000566354 HMGB1P09429 215 aaKnown RBP15.49■□□□□ 0.07
VPS4A-204ENST00000566354 DEFB132Q7Z7B7 95 aa15.49■□□□□ 0.07
VPS4A-204ENST00000566354 FBXO3Q9UK99 471 aa15.49■□□□□ 0.07
VPS4A-204ENST00000566354 CYP21A2P08686 494 aa15.49■□□□□ 0.07
VPS4A-204ENST00000566354 TFCP2Q12800 502 aa15.49■□□□□ 0.07
VPS4A-204ENST00000566354 IFIT5Q13325 482 aaKnown RBP15.49■□□□□ 0.07
VPS4A-204ENST00000566354 NFIXQ14938 502 aa15.49■□□□□ 0.07
VPS4A-204ENST00000566354 LRRC24Q50LG9 513 aa15.49■□□□□ 0.07
VPS4A-204ENST00000566354 CCDC24Q8N4L8 307 aa15.49■□□□□ 0.07
VPS4A-204ENST00000566354 PUS3Q9BZE2 481 aaKnown RBP15.49■□□□□ 0.07
VPS4A-204ENST00000566354 ITGA6P23229 1130 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 ZSCAN25Q6NSZ9 544 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 ATG9AQ7Z3C6 839 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 NBPF5PQ86XG9 351 aaPredicted RBP15.48■□□□□ 0.07
VPS4A-204ENST00000566354 SMARCC2Q8TAQ2 1214 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 HAUS7Q99871 368 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 DNAJC25Q9H1X3 360 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 ABCC12Q96J65 1359 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 LAMB2P55268 1798 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 ZNF609O15014 1411 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 CTAGE5O15320 804 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 CDC25BP30305 580 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 NAA16Q6N069 864 aaPredicted RBP15.48■□□□□ 0.07
VPS4A-204ENST00000566354 PPP4R3CPQ6ZMV5 832 aa15.48■□□□□ 0.07
VPS4A-204ENST00000566354 COL23A1Q86Y22 540 aaPredicted RBP15.48■□□□□ 0.07
VPS4A-204ENST00000566354 PFKFB2O60825 505 aa15.47■□□□□ 0.07
VPS4A-204ENST00000566354 C3orf67Q6ZVT6 689 aa15.47■□□□□ 0.07
VPS4A-204ENST00000566354 ANKRD7Q92527 254 aa15.47■□□□□ 0.07
VPS4A-204ENST00000566354 NRBP1Q9UHY1 535 aa15.47■□□□□ 0.07
VPS4A-204ENST00000566354 EYA2O00167 538 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 HMGB2P26583 209 aaKnown RBP15.46■□□□□ 0.07
VPS4A-204ENST00000566354 SCRN1Q12765 414 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 LRMPQ12912 555 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 PPP4R3BQ5MIZ7 849 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 TAF3Q5VWG9 929 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 PDCL2Q8N4E4 241 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 DDX11Q96FC9 970 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 DNAJC2Q99543 621 aaKnown RBP15.46■□□□□ 0.07
VPS4A-204ENST00000566354 CLIP2Q9UDT6 1046 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 RCOR1Q9UKL0 485 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 SF3B2Q13435 895 aaKnown RBP15.46■□□□□ 0.07
VPS4A-204ENST00000566354 ATL3Q6DD88 541 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 SARM1Q6SZW1 724 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 TICAM2Q86XR7 235 aa15.46■□□□□ 0.07
VPS4A-204ENST00000566354 CASZ1Q86V15 1759 aa15.46■□□□□ 0.06
VPS4A-204ENST00000566354 ANKRD18BA2A2Z9 1011 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 GOLGA6L19H0YKK7 550 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 CCDC129Q6ZRS4 1044 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 DHX32Q7L7V1 743 aaKnown RBP15.45■□□□□ 0.06
VPS4A-204ENST00000566354 DHX37Q8IY37 1157 aaKnown RBP15.45■□□□□ 0.06
VPS4A-204ENST00000566354 KBTBD3Q8NAB2 608 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 SEC62Q99442 399 aaKnown RBP15.45■□□□□ 0.06
VPS4A-204ENST00000566354 DBNDD2Q9BQY9 259 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 NYXQ9GZU5 481 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 SEC31BQ9NQW1 1179 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 CARMIL3Q8ND23 1372 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 PNPLA7Q6ZV29 1317 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 SMTNL1A8MU46 457 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 ADD1P35611 737 aaKnown RBP15.45■□□□□ 0.06
VPS4A-204ENST00000566354 IQCB1Q15051 598 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 SYCP1Q15431 976 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 TPTE2Q6XPS3 522 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 ZFP91Q96JP5 570 aaPredicted RBP15.45■□□□□ 0.06
VPS4A-204ENST00000566354 PAXBP1Q9Y5B6 917 aa15.45■□□□□ 0.06
VPS4A-204ENST00000566354 BAG6P46379 1132 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 NSUN7Q8NE18 718 aaKnown RBP15.44■□□□□ 0.06
VPS4A-204ENST00000566354 MRFAP1L1Q96HT8 127 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 NDUFB9Q9Y6M9 179 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 TAF1P21675 1872 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 NEMFO60524 1076 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 IL15P40933 162 aaPredicted RBP15.44■□□□□ 0.06
VPS4A-204ENST00000566354 STX1AQ16623 288 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 SLC10A5Q5PT55 438 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 CACTINQ8WUQ7 758 aaKnown RBP15.44■□□□□ 0.06
VPS4A-204ENST00000566354 CHMP4CQ96CF2 233 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 HELLSQ9NRZ9 838 aa15.44■□□□□ 0.06
VPS4A-204ENST00000566354 COL4A1P02462 1669 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 NPHP1O15259 732 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 CIAO1O76071 339 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 TNNT1P13805 278 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 TM4SF1P30408 202 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 CCDC152Q4G0S7 254 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 LDHAL6AQ6ZMR3 332 aa15.43■□□□□ 0.06
VPS4A-204ENST00000566354 DDX46Q7L014 1031 aaKnown RBP15.43■□□□□ 0.06
VPS4A-204ENST00000566354 CCAR1Q8IX12 1150 aaKnown RBP15.43■□□□□ 0.06
VPS4A-204ENST00000566354 C16orf45Q96MC5 204 aaPredicted RBP15.43■□□□□ 0.06
VPS4A-204ENST00000566354 ZNF396Q96N95 335 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms