RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 MYH2Q9UKX2 1941 aa11.38□□□□□ -0.59
VPS35-206ENST00000565228 OS9Q13438 667 aaPredicted RBP11.37□□□□□ -0.59
VPS35-206ENST00000565228 DIXDC1Q155Q3 683 aa11.37□□□□□ -0.59
VPS35-206ENST00000565228 CFAP100Q494V2 611 aa11.37□□□□□ -0.59
VPS35-206ENST00000565228 USP48Q86UV5 1035 aa11.37□□□□□ -0.59
VPS35-206ENST00000565228 VPS37DQ86XT2 251 aa11.37□□□□□ -0.59
VPS35-206ENST00000565228 C16orf71Q8IYS4 520 aaPredicted RBP11.37□□□□□ -0.59
VPS35-206ENST00000565228 ANTXR1Q9H6X2 564 aa11.37□□□□□ -0.59
VPS35-206ENST00000565228 TTF2Q9UNY4 1162 aaKnown RBP11.37□□□□□ -0.59
VPS35-206ENST00000565228 AKAP2Q9Y2D5 859 aa11.37□□□□□ -0.59
VPS35-206ENST00000565228 MYO3BQ8WXR4 1341 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 SPDYE2BA6NHP3 402 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 CHGBP05060 677 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 CYP2E1P05181 493 aaPredicted RBP11.36□□□□□ -0.59
VPS35-206ENST00000565228 SPDYE6P0CI01 402 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 TSHZ3Q63HK5 1081 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 APOBEC3HQ6NTF7 200 aaKnown RBP11.36□□□□□ -0.59
VPS35-206ENST00000565228 AACSQ86V21 672 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 MTMR14Q8NCE2 650 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 EDC3Q96F86 508 aaKnown RBP11.36□□□□□ -0.59
VPS35-206ENST00000565228 PIH1D3Q9NQM4 214 aaKnown RBP11.36□□□□□ -0.59
VPS35-206ENST00000565228 DOCK2Q92608 1830 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 SSC5DA1L4H1 1573 aa11.36□□□□□ -0.59
VPS35-206ENST00000565228 SALL1Q9NSC2 1324 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 CLRN2A0PK11 232 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 ZAP70P43403 619 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 CRKP46108 304 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 CACNB3P54284 484 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 SLFNL1Q499Z3 407 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 ADGRA1Q86SQ6 560 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 SPATA5Q8NB90 893 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 ZC3H15Q8WU90 426 aaKnown RBP11.35□□□□□ -0.59
VPS35-206ENST00000565228 KLRG1Q96E93 195 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 KIF1BPQ96EK5 621 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 BCL11AQ9H165 835 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 TDRD3Q9H7E2 651 aaKnown RBP11.35□□□□□ -0.59
VPS35-206ENST00000565228 DENND2AQ9ULE3 1009 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 FZD1Q9UP38 647 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 PDS5AQ29RF7 1337 aaKnown RBP11.35□□□□□ -0.59
VPS35-206ENST00000565228 SALL3Q9BXA9 1300 aa11.35□□□□□ -0.59
VPS35-206ENST00000565228 CNTNAP1P78357 1384 aa11.34□□□□□ -0.59
VPS35-206ENST00000565228 RAB11FIP3O75154 756 aa11.34□□□□□ -0.59
VPS35-206ENST00000565228 HMMRO75330 724 aa11.34□□□□□ -0.59
VPS35-206ENST00000565228 HDAC1Q13547 482 aaPredicted RBP11.34□□□□□ -0.59
VPS35-206ENST00000565228 MOB2Q70IA6 237 aa11.34□□□□□ -0.59
VPS35-206ENST00000565228 ZNF512BQ96KM6 892 aaPredicted RBP11.34□□□□□ -0.59
VPS35-206ENST00000565228 DAGLAQ9Y4D2 1042 aa11.34□□□□□ -0.59
VPS35-206ENST00000565228 CDK5RAP2Q96SN8 1893 aa11.34□□□□□ -0.59
VPS35-206ENST00000565228 SEMA3EO15041 775 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 FRAT2O75474 233 aaPredicted RBP11.33□□□□□ -0.6
VPS35-206ENST00000565228 SLURP2P0DP57 97 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 MECOMQ03112 1051 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 KRT26Q7Z3Y9 468 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 ERC1Q8IUD2 1116 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 WDR66Q8TBY9 1149 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 TBC1D22AQ8WUA7 517 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 NSUN4Q96CB9 384 aaKnown RBP11.33□□□□□ -0.6
VPS35-206ENST00000565228 CHMP4BQ9H444 224 aaKnown RBP11.33□□□□□ -0.6
VPS35-206ENST00000565228 ZNF70Q9UC06 446 aaPredicted RBP11.33□□□□□ -0.6
VPS35-206ENST00000565228 SERPINA10Q9UK55 444 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 GAKO14976 1311 aa11.33□□□□□ -0.6
VPS35-206ENST00000565228 RFX7Q2KHR2 1363 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 PAPPA2Q9BXP8 1791 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 NFIAQ12857 509 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 DLGAP5Q15398 846 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 SPDYE2Q495Y8 402 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 TTC39AQ5SRH9 613 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 CDC37L1Q7L3B6 337 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 ZFPM1Q8IX07 1006 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 CDCA5Q96FF9 252 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 ZDHHC15Q96MV8 337 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 TEPSINQ96N21 525 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 LRRCC1Q9C099 1032 aa11.32□□□□□ -0.6
VPS35-206ENST00000565228 MAST2Q6P0Q8 1798 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 HDLBPQ00341 1268 aaKnown RBP11.31□□□□□ -0.6
VPS35-206ENST00000565228 HSP90AB4PQ58FF6 505 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 CDC42EP5Q6NZY7 148 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 HHIPL2Q6UWX4 724 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 SMC5Q8IY18 1101 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 CLASRPQ8N2M8 674 aaKnown RBP11.31□□□□□ -0.6
VPS35-206ENST00000565228 OGFOD1Q8N543 542 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 MRIQ9BWK5 157 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 GNL3LQ9NVN8 582 aaKnown RBP11.31□□□□□ -0.6
VPS35-206ENST00000565228 PCDH10Q9P2E7 1040 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 ABCF2Q9UG63 623 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 SUGT1Q9Y2Z0 365 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 PITPNM2Q9BZ72 1349 aa11.31□□□□□ -0.6
VPS35-206ENST00000565228 CELF2O95319 508 aaKnown RBP11.3□□□□□ -0.6
VPS35-206ENST00000565228 LDHBP07195 334 aaKnown RBP11.3□□□□□ -0.6
VPS35-206ENST00000565228 UQCRFS1P1P0C7P4 283 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 RBM5P52756 815 aaKnown RBP eCLIP11.3□□□□□ -0.6
VPS35-206ENST00000565228 RHBDL3P58872 404 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 CCDC158Q5M9N0 1113 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 GORABQ5T7V8 394 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 SH3BP5LQ7L8J4 393 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 SKAP1Q86WV1 359 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 PI4K2BQ8TCG2 481 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 DCPSQ96C86 337 aaKnown RBP11.3□□□□□ -0.6
VPS35-206ENST00000565228 BOLA2Q9H3K6 86 aa11.3□□□□□ -0.6
VPS35-206ENST00000565228 ZNF408Q9H9D4 720 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms