RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 ZFYVE27Q5T4F4 411 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 MAP4K1Q92918 833 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 PHKBQ93100 1093 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 ZNF594Q96JF6 807 aaPredicted RBP8.09□□□□□ -1.11
USP3-210ENST00000559192 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.09□□□□□ -1.112e-22■■■■■ 279.5
USP3-210ENST00000559192 CDK12Q9NYV4 1490 aaPredicted RBP8.09□□□□□ -1.11
USP3-210ENST00000559192 ATP7BP35670 1465 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 CCDC196A0A1B0GTZ2 297 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 SSBP05455 408 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP3-210ENST00000559192 ZSCAN26Q16670 478 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 SLC9C2Q5TAH2 1124 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 PLA2G4DQ86XP0 818 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 IGSF22Q8N9C0 903 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 CTAGE1Q96RT6 745 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 ST7Q9NRC1 585 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 KCNH3Q9ULD8 1083 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 AATKQ6ZMQ8 1374 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 KRT18P05783 430 aaKnown RBP8.09□□□□□ -1.11
USP3-210ENST00000559192 KMT5BQ4FZB7 885 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 FKBP15Q5T1M5 1219 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 TTC14Q96N46 770 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 PPP2R2CQ9Y2T4 447 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 TNRQ92752 1358 aa8.09□□□□□ -1.11
USP3-210ENST00000559192 MTIF2P46199 727 aaKnown RBP8.09□□□□□ -1.12
USP3-210ENST00000559192 CLCN6P51797 869 aa8.09□□□□□ -1.12
USP3-210ENST00000559192 PIP4K2BP78356 416 aa8.09□□□□□ -1.12
USP3-210ENST00000559192 SYCP1Q15431 976 aa8.09□□□□□ -1.12
USP3-210ENST00000559192 CCDC178Q5BJE1 867 aa8.09□□□□□ -1.12
USP3-210ENST00000559192 SPATA24Q86W54 205 aa8.09□□□□□ -1.12
USP3-210ENST00000559192 KRI1Q8N9T8 703 aaKnown RBP8.09□□□□□ -1.12
USP3-210ENST00000559192 IL25Q9H293 177 aa8.09□□□□□ -1.12
USP3-210ENST00000559192 ERCC6L2Q5T890 1561 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 ZSCAN20P17040 1043 aaPredicted RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 UBXN1Q04323 297 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 MAP3K12Q12852 859 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 TERF2Q15554 542 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 RTN1Q16799 776 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 CCDC96Q2M329 555 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 LDHAL6AQ6ZMR3 332 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 CCDC91Q7Z6B0 441 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 DDX41Q9UJV9 622 aaKnown RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 CPSF1Q10570 1443 aaKnown RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 ARHGEF40Q8TER5 1519 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 POLR2DO15514 142 aaKnown RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 PFKFB2O60825 505 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 WTAPQ15007 396 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 ADALQ6DHV7 355 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 TRIM47Q96LD4 638 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 ABCC3O15438 1527 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 ATP2C2O75185 946 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 IL15P40933 162 aaPredicted RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 PROSER3Q2NL68 480 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 MAATS1Q7Z4T9 603 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 PGBD1Q96JS3 809 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 GDAP1L1Q96MZ0 367 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 GOLPH3LQ9H4A5 285 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 B4E1Z4 1266 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 ARHGAP6O43182 974 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 TRIM21P19474 475 aaKnown RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 TDRD12Q587J7 1177 aaKnown RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 ANKRD18AQ8IVF6 992 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 TAF4BQ92750 862 aa8.08□□□□□ -1.12
USP3-210ENST00000559192 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.08□□□□□ -1.12
USP3-210ENST00000559192 GNL3LQ9NVN8 582 aaKnown RBP8.08□□□□□ -1.12
USP3-210ENST00000559192 ANKRD18BA2A2Z9 1011 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 USO1O60763 962 aaKnown RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 HSF2BPO75031 334 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 RESTQ13127 1097 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 CACNA2D4Q7Z3S7 1137 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 CERS3Q8IU89 383 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 CLIC6Q96NY7 704 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 CABP5Q9NP86 173 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 KDRP35968 1356 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 A0A1B0GUL7 405 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 GYS2P54840 703 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 PPARDQ03181 441 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 ZNF827Q17R98 1081 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 VPS16Q9H269 839 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 NFE2L3Q9Y4A8 694 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 PRAMEF22A3QJZ6 481 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 TAF5LO75529 589 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 TTF1Q15361 905 aaPredicted RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 CATIPQ7Z7H3 387 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 GPR161Q8N6U8 529 aaKnown RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 AFAP1L1Q8TED9 768 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 NAPGQ99747 312 aaPredicted RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 SEPT11Q9NVA2 429 aaKnown RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 MACROD2A1Z1Q3 448 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 EFCAB8A8MWE9 144 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 G3V3G9 751 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 PAFAH1B1P43034 410 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 ETF1P62495 437 aaKnown RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 CKAP4Q07065 602 aaKnown RBP8.07□□□□□ -1.12
USP3-210ENST00000559192 NECTIN1Q15223 517 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 DCAF8Q5TAQ9 597 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 NBPF6Q5VWK0 638 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 IFNL2Q8IZJ0 200 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 NBPF4Q96M43 638 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 ALS2CR12Q96Q35 445 aa8.07□□□□□ -1.12
USP3-210ENST00000559192 LUC7LQ9NQ29 371 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms