RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 RC3H1Q5TC82 1133 aaKnown RBP12.63□□□□□ -0.39
USP3-206ENST00000558157 PPP1R42Q7Z4L9 355 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 BICC1Q9H694 974 aaKnown RBP12.63□□□□□ -0.39
USP3-206ENST00000558157 RNF216Q9NWF9 866 aaPredicted RBP12.63□□□□□ -0.39
USP3-206ENST00000558157 TRMT1Q9NXH9 659 aaKnown RBP12.63□□□□□ -0.39
USP3-206ENST00000558157 JRKLQ9Y4A0 524 aa12.63□□□□□ -0.39
USP3-206ENST00000558157 GNPATO15228 680 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 GPTP24298 496 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 CASP7P55210 303 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 ST5P78524 1137 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 PPP1R13BQ96KQ4 1090 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 SPATA32Q96LK8 384 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 TTC31Q49AM3 519 aaPredicted RBP12.62□□□□□ -0.39
USP3-206ENST00000558157 HSP90AB3PQ58FF7 597 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 LARP1BQ659C4 914 aaKnown RBP12.62□□□□□ -0.39
USP3-206ENST00000558157 CCDC83Q8IWF9 413 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 MSL3Q8N5Y2 521 aaKnown RBP12.62□□□□□ -0.39
USP3-206ENST00000558157 LSG1Q9H089 658 aaKnown RBP12.62□□□□□ -0.39
USP3-206ENST00000558157 HDAC5Q9UQL6 1122 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 TTC41PQ6P2S7 1318 aa12.62□□□□□ -0.39
USP3-206ENST00000558157 UBR3Q6ZT12 1888 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 TRIM66O15016 1216 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 SRGAP3O43295 1099 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 TADA3O75528 432 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 POLA2Q14181 598 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 EPHA10Q5JZY3 1008 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 JAKMIP3Q5VZ66 844 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 E4F1Q66K89 784 aaPredicted RBP12.61□□□□□ -0.39
USP3-206ENST00000558157 LEKR1Q6ZMV7 388 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 AMIGO3Q86WK7 504 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 GPR161Q8N6U8 529 aaKnown RBP12.61□□□□□ -0.39
USP3-206ENST00000558157 MNS1Q8NEH6 495 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 SSH3Q8TE77 659 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 ZNF622Q969S3 477 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP3-206ENST00000558157 BECN2A8MW95 431 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 H7C1W4 665 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 RPS6KA4O75676 772 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 TBC1D8O95759 1140 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 BRD2P25440 801 aaKnown RBP12.61□□□□□ -0.39
USP3-206ENST00000558157 ETF1P62495 437 aaKnown RBP12.61□□□□□ -0.39
USP3-206ENST00000558157 TRIM28Q13263 835 aaKnown RBP12.61□□□□□ -0.39
USP3-206ENST00000558157 MTX1Q13505 466 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 LRRFIP1Q32MZ4 808 aaKnown RBP12.61□□□□□ -0.39
USP3-206ENST00000558157 LEO1Q8WVC0 666 aaPredicted RBP12.61□□□□□ -0.39
USP3-206ENST00000558157 KCNB2Q92953 911 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 DNAI1Q9UI46 699 aa12.61□□□□□ -0.39
USP3-206ENST00000558157 NPHP1O15259 732 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 ARID5BQ14865 1188 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 SLC27A3Q5K4L6 730 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 UBN2Q6ZU65 1347 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 NLRP10Q86W26 655 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 SUGP1Q8IWZ8 645 aaKnown RBP12.6□□□□□ -0.39
USP3-206ENST00000558157 REXO1L1PQ8IX06 675 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 PPM1EQ8WY54 764 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 DEF6Q9H4E7 631 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 ZSWIM6Q9HCJ5 1215 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 PDRG1Q9NUG6 133 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 LCMT1Q9UIC8 334 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 EXOC6BQ9Y2D4 811 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 RGPD3A6NKT7 1758 aaPredicted RBP12.6□□□□□ -0.39
USP3-206ENST00000558157 RGPD4Q7Z3J3 1758 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 APBA3O96018 575 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 ATP2B1P20020 1258 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 TXNRD1Q16881 649 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 CC2D1AQ6P1N0 951 aaPredicted RBP12.6□□□□□ -0.39
USP3-206ENST00000558157 NAT10Q9H0A0 1025 aaKnown RBP12.6□□□□□ -0.39
USP3-206ENST00000558157 ARFGAP3Q9NP61 516 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 MKRN1Q9UHC7 482 aaKnown RBP12.6□□□□□ -0.39
USP3-206ENST00000558157 RTCBQ9Y3I0 505 aaKnown RBP12.6□□□□□ -0.39
USP3-206ENST00000558157 CYP46A1Q9Y6A2 500 aa12.6□□□□□ -0.39
USP3-206ENST00000558157 NR1I2O75469 434 aa12.59□□□□□ -0.39
USP3-206ENST00000558157 SWT1Q5T5J6 900 aaKnown RBP12.59□□□□□ -0.39
USP3-206ENST00000558157 ZNF34Q8IZ26 560 aa12.59□□□□□ -0.39
USP3-206ENST00000558157 ANO10Q9NW15 660 aa12.59□□□□□ -0.39
USP3-206ENST00000558157 ADAM21Q9UKJ8 722 aa12.59□□□□□ -0.39
USP3-206ENST00000558157 TSHZ3Q63HK5 1081 aa12.59□□□□□ -0.39
USP3-206ENST00000558157 RASEFQ8IZ41 740 aa12.59□□□□□ -0.39
USP3-206ENST00000558157 PROM2Q8N271 834 aa12.59□□□□□ -0.39
USP3-206ENST00000558157 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.58□□□□□ -0.4
USP3-206ENST00000558157 LOC102724159A0A0B4J2E5 919 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 LARGE1O95461 756 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 PCCAP05165 728 aaPredicted RBP12.58□□□□□ -0.4
USP3-206ENST00000558157 PWP2Q15269 919 aaKnown RBP12.58□□□□□ -0.4
USP3-206ENST00000558157 BICD2Q8TD16 824 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 CHMP3Q9Y3E7 222 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 CPP00450 1065 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 CCDC91Q7Z6B0 441 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 ILDR1Q86SU0 546 aaPredicted RBP12.58□□□□□ -0.4
USP3-206ENST00000558157 CNTROBQ8N137 903 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 ZBTB38Q8NAP3 1195 aaPredicted RBP12.58□□□□□ -0.4
USP3-206ENST00000558157 RUFY2Q8WXA3 655 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 FAM89AQ96GI7 184 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 SRP68Q9UHB9 627 aaKnown RBP12.58□□□□□ -0.4
USP3-206ENST00000558157 ZNF652Q9Y2D9 606 aa12.58□□□□□ -0.4
USP3-206ENST00000558157 PLSCR1O15162 318 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 RAB11FIP3O75154 756 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 SFPQP23246 707 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP3-206ENST00000558157 FOXO4P98177 505 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 ANKRD1Q15327 319 aa12.57□□□□□ -0.4
USP3-206ENST00000558157 RABL6Q3YEC7 729 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms