RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 MB21D2Q8IYB1 491 aaPredicted RBP31.13■■■□□ 2.57
CCDC88C-205ENST00000553403 SRCAPQ6ZRS2 3230 aa31.12■■■□□ 2.57
CCDC88C-205ENST00000553403 ZNF274Q96GC6 653 aaPredicted RBP31.12■■■□□ 2.57
CCDC88C-205ENST00000553403 APPP05067 770 aa31.11■■■□□ 2.57
CCDC88C-205ENST00000553403 MCM5P33992 734 aa31.11■■■□□ 2.57
CCDC88C-205ENST00000553403 EVCP57679 992 aa31.11■■■□□ 2.57
CCDC88C-205ENST00000553403 LARP1BQ659C4 914 aaKnown RBP31.11■■■□□ 2.57
CCDC88C-205ENST00000553403 COL1A1P02452 1464 aaPredicted RBP31.1■■■□□ 2.57
CCDC88C-205ENST00000553403 WTIPA6NIX2 430 aaPredicted RBP31.1■■■□□ 2.57
CCDC88C-205ENST00000553403 ST5P78524 1137 aa31.1■■■□□ 2.57
CCDC88C-205ENST00000553403 RALYLQ86SE5 291 aaKnown RBP31.1■■■□□ 2.57
CCDC88C-205ENST00000553403 PROM2Q8N271 834 aa31.1■■■□□ 2.57
CCDC88C-205ENST00000553403 APOBRQ0VD83 1088 aa31.09■■■□□ 2.57
CCDC88C-205ENST00000553403 CHAMP1Q96JM3 812 aa31.09■■■□□ 2.57
CCDC88C-205ENST00000553403 ISY1Q9ULR0 285 aaKnown RBP31.09■■■□□ 2.57
CCDC88C-205ENST00000553403 IQSEC3Q9UPP2 1182 aaPredicted RBP31.09■■■□□ 2.57
CCDC88C-205ENST00000553403 SERPINB2P05120 415 aa31.09■■■□□ 2.57
CCDC88C-205ENST00000553403 L1TD1Q5T7N2 865 aaKnown RBP31.09■■■□□ 2.57
CCDC88C-205ENST00000553403 FSD2A1L4K1 749 aa31.08■■■□□ 2.57
CCDC88C-205ENST00000553403 HIBADHP31937 336 aaKnown RBP31.08■■■□□ 2.57
CCDC88C-205ENST00000553403 SCRN1Q12765 414 aa31.08■■■□□ 2.57
CCDC88C-205ENST00000553403 IFNL3Q8IZI9 196 aa31.08■■■□□ 2.57
CCDC88C-205ENST00000553403 NBPF3Q9H094 633 aa31.08■■■□□ 2.57
CCDC88C-205ENST00000553403 ARMT1Q9H993 441 aa31.08■■■□□ 2.57
CCDC88C-205ENST00000553403 PRC1O43663 620 aa31.07■■■□□ 2.56
CCDC88C-205ENST00000553403 TRDNQ13061 729 aa31.07■■■□□ 2.56
CCDC88C-205ENST00000553403 TMEM87AQ8NBN3 555 aa31.07■■■□□ 2.56
CCDC88C-205ENST00000553403 SMARCC2Q8TAQ2 1214 aa31.07■■■□□ 2.56
CCDC88C-205ENST00000553403 CYP7A1P22680 504 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 CRY2Q49AN0 593 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 EPB41L4AQ9HCS5 686 aaPredicted RBP31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 RAI14Q9P0K7 980 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 LEMD3Q9Y2U8 911 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 GOLGA6L3A6NEY3 463 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 RGPD3A6NKT7 1758 aaPredicted RBP31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 MBD3O95983 291 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 RGPD4Q7Z3J3 1758 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 NACAP1Q9BZK3 213 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 NAPBQ9H115 298 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 ABCF2Q9UG63 623 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 IRS2Q9Y4H2 1338 aa31.06■■■□□ 2.56
CCDC88C-205ENST00000553403 GSG1L2A8MUP6 293 aa31.05■■■□□ 2.56
CCDC88C-205ENST00000553403 PDIA3P30101 505 aaKnown RBP31.05■■■□□ 2.56
CCDC88C-205ENST00000553403 CHST3Q7LGC8 479 aa31.05■■■□□ 2.56
CCDC88C-205ENST00000553403 TBC1D10CQ8IV04 446 aa31.05■■■□□ 2.56
CCDC88C-205ENST00000553403 LCORLQ8N3X6 602 aa31.05■■■□□ 2.56
CCDC88C-205ENST00000553403 RPGRQ92834 1020 aaKnown RBP31.05■■■□□ 2.56
CCDC88C-205ENST00000553403 VPS37CA5D8V6 355 aaPredicted RBP31.04■■■□□ 2.56
CCDC88C-205ENST00000553403 KLRK1P26718 216 aa31.04■■■□□ 2.56
CCDC88C-205ENST00000553403 ANTXR2P58335 489 aa31.04■■■□□ 2.56
CCDC88C-205ENST00000553403 HMGN5P82970 282 aaKnown RBP31.03■■■□□ 2.56
CCDC88C-205ENST00000553403 TMED8Q6PL24 325 aaPredicted RBP31.03■■■□□ 2.56
CCDC88C-205ENST00000553403 GPT2Q8TD30 523 aa31.03■■■□□ 2.56
CCDC88C-205ENST00000553403 SLC4A4Q9Y6R1 1079 aa31.03■■■□□ 2.56
CCDC88C-205ENST00000553403 JAK2O60674 1132 aa31.02■■■□□ 2.56
CCDC88C-205ENST00000553403 NSUN7Q8NE18 718 aaKnown RBP31.02■■■□□ 2.56
CCDC88C-205ENST00000553403 RBM17Q96I25 401 aaKnown RBP31.02■■■□□ 2.56
CCDC88C-205ENST00000553403 TFCP2L1Q9NZI6 479 aa31.02■■■□□ 2.56
CCDC88C-205ENST00000553403 TIAM2Q8IVF5 1701 aa31.02■■■□□ 2.56
CCDC88C-205ENST00000553403 CACNA1SQ13698 1873 aa31.02■■■□□ 2.56
CCDC88C-205ENST00000553403 XDHP47989 1333 aa31.01■■■□□ 2.56
CCDC88C-205ENST00000553403 POLRMTO00411 1230 aaKnown RBP31.01■■■□□ 2.55
CCDC88C-205ENST00000553403 DTNBO60941 627 aa31.01■■■□□ 2.55
CCDC88C-205ENST00000553403 IGSF3O75054 1194 aa31.01■■■□□ 2.55
CCDC88C-205ENST00000553403 NCLP19338 710 aaKnown RBP31.01■■■□□ 2.55
CCDC88C-205ENST00000553403 KIF3AQ9Y496 699 aa31.01■■■□□ 2.55
CCDC88C-205ENST00000553403 MAGEB6P1A0A0J9YX57 407 aa31■■■□□ 2.55
CCDC88C-205ENST00000553403 DDR1Q08345 913 aa31■■■□□ 2.55
CCDC88C-205ENST00000553403 C15orf52Q6ZUT6 534 aaKnown RBP31■■■□□ 2.55
CCDC88C-205ENST00000553403 USP48Q86UV5 1035 aa31■■■□□ 2.55
CCDC88C-205ENST00000553403 CSPP1Q1MSJ5 1256 aa31■■■□□ 2.55
CCDC88C-205ENST00000553403 AKT1S1Q96B36 256 aa31■■■□□ 2.55
CCDC88C-205ENST00000553403 ANKIB1Q9P2G1 1089 aa31■■■□□ 2.55
CCDC88C-205ENST00000553403 MYH13Q9UKX3 1938 aa30.99■■■□□ 2.55
CCDC88C-205ENST00000553403 PRKAB2O43741 272 aa30.99■■■□□ 2.55
CCDC88C-205ENST00000553403 FOXD4L6Q3SYB3 417 aaPredicted RBP30.99■■■□□ 2.55
CCDC88C-205ENST00000553403 NAA16Q6N069 864 aaPredicted RBP30.99■■■□□ 2.55
CCDC88C-205ENST00000553403 FOXD4L3Q6VB84 417 aaPredicted RBP30.99■■■□□ 2.55
CCDC88C-205ENST00000553403 MIGA1Q8NAN2 632 aa30.99■■■□□ 2.55
CCDC88C-205ENST00000553403 CNNM2Q9H8M5 875 aa30.99■■■□□ 2.55
CCDC88C-205ENST00000553403 CTDNEP1O95476 244 aa30.98■■■□□ 2.55
CCDC88C-205ENST00000553403 HOXA10P31260 410 aaPredicted RBP30.98■■■□□ 2.55
CCDC88C-205ENST00000553403 TDO2P48775 406 aa30.98■■■□□ 2.55
CCDC88C-205ENST00000553403 CDC37L1Q7L3B6 337 aa30.98■■■□□ 2.55
CCDC88C-205ENST00000553403 ADGRA1Q86SQ6 560 aa30.98■■■□□ 2.55
CCDC88C-205ENST00000553403 FAM184AQ8NB25 1140 aa30.98■■■□□ 2.55
CCDC88C-205ENST00000553403 CNPY2Q9Y2B0 182 aa30.98■■■□□ 2.55
CCDC88C-205ENST00000553403 KLRG2A4D1S0 409 aaPredicted RBP30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 CCT2P78371 535 aaKnown RBP30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 CAVIN1Q6NZI2 390 aaKnown RBP30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 TMEM87BQ96K49 555 aa30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 RIOK1Q9BRS2 568 aaKnown RBP30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 GPHNQ9NQX3 736 aaPredicted RBP30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 PTPDC1A2A3K4 754 aa30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 NAP1L2Q9ULW6 460 aaPredicted RBP30.97■■■□□ 2.55
CCDC88C-205ENST00000553403 SALL1Q9NSC2 1324 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 KLF18A0A0U1RQI7 1052 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 BBOX1O75936 387 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 ZNF827Q17R98 1081 aa30.96■■■□□ 2.55
CCDC88C-205ENST00000553403 AKNAD1Q5T1N1 836 aa30.96■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms