RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 RBM43Q6ZSC3 357 aaKnown RBP21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 RAB11FIP4Q86YS3 637 aa21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 RCOR1Q9UKL0 485 aa21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 CHD4Q14839 1912 aa21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 AP5Z1O43299 807 aa21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 KCNQ2O43526 872 aa21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 APPP05067 770 aa21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 USP28Q96RU2 1077 aa21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 STRBPQ96SI9 672 aaKnown RBP21.73■■□□□ 1.07
PRPF40B-208ENST00000548436 CCDC152Q4G0S7 254 aa21.72■■□□□ 1.07
PRPF40B-208ENST00000548436 BARGINQ6ZT62 677 aa21.72■■□□□ 1.07
PRPF40B-208ENST00000548436 COL4A1P02462 1669 aa21.72■■□□□ 1.07
PRPF40B-208ENST00000548436 BCORQ6W2J9 1755 aa21.72■■□□□ 1.07
PRPF40B-208ENST00000548436 CYB5R4Q7L1T6 521 aa21.71■■□□□ 1.07
PRPF40B-208ENST00000548436 MPNDQ8N594 471 aa21.71■■□□□ 1.07
PRPF40B-208ENST00000548436 OFD1O75665 1012 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 TRDNQ13061 729 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 OTUD7BQ6GQQ9 843 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 MAGEB6Q8N7X4 407 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 AIDAQ96BJ3 306 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 RTL9Q8NET4 1388 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 CASZ1Q86V15 1759 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 DHX16O60231 1041 aaKnown RBP21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 ATL3Q6DD88 541 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 FAM200AQ8TCP9 573 aa21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 ZNF396Q96N95 335 aaPredicted RBP21.7■■□□□ 1.06
PRPF40B-208ENST00000548436 TAF1P21675 1872 aa21.69■■□□□ 1.06
PRPF40B-208ENST00000548436 IGHMBP2P38935 993 aaKnown RBP21.69■■□□□ 1.06
PRPF40B-208ENST00000548436 BCAMP50895 628 aa21.69■■□□□ 1.06
PRPF40B-208ENST00000548436 ORC3Q9UBD5 711 aaPredicted RBP21.69■■□□□ 1.06
PRPF40B-208ENST00000548436 PLCB2Q00722 1185 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 MAP3K12Q12852 859 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 EPB41L4AQ9HCS5 686 aaPredicted RBP21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 ANGEL1Q9UNK9 670 aaKnown RBP21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 B4E1Z4 1266 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 ALX1Q15699 326 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 ANO6Q4KMQ2 910 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 C8orf76Q96K31 380 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 GOLPH3LQ9H4A5 285 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 NEDD4P46934 1319 aa21.68■■□□□ 1.06
PRPF40B-208ENST00000548436 PATL2C9JE40 543 aaKnown RBP21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 SH2B2O14492 632 aaPredicted RBP21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 MBD4O95243 580 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 CHRNDQ07001 517 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 CCAR1Q8IX12 1150 aaKnown RBP21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 SMARCC1Q92922 1105 aaPredicted RBP21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 INCENPQ9NQS7 918 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 GJB4Q9NTQ9 266 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 A0A1B0GUL6 1792 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 CPLX1O14810 134 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 IFNL3Q8IZI9 196 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 FBXO18Q8NFZ0 1043 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 ARMT1Q9H993 441 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 SENP2Q9HC62 589 aa21.67■■□□□ 1.06
PRPF40B-208ENST00000548436 LUZP1Q86V48 1076 aa21.66■■□□□ 1.06
PRPF40B-208ENST00000548436 ZNF830Q96NB3 372 aaPredicted RBP21.66■■□□□ 1.06
PRPF40B-208ENST00000548436 ZMYM6O95789 1325 aa21.66■■□□□ 1.06
PRPF40B-208ENST00000548436 BCL9LQ86UU0 1499 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 LINC00116Q8NCU8 138 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 CBX8Q9HC52 389 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 ECM29Q5VYK3 1845 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 ZNF831Q5JPB2 1677 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 SNW1Q13573 536 aaKnown RBP21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 IGDCC4Q8TDY8 1250 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 ZNF652Q9Y2D9 606 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 TACC3Q9Y6A5 838 aa21.65■■□□□ 1.06
PRPF40B-208ENST00000548436 GSG1L2A8MUP6 293 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 CTDSPL2Q05D32 466 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 SASS6Q6UVJ0 657 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 RTEL1Q9NZ71 1219 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 PRKAB2O43741 272 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 POLR3DP05423 398 aaPredicted RBP21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 RXRAP19793 462 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 HSPA1LP34931 641 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 KCNQ4P56696 695 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 ERFEQ4G0M1 354 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 APOA5Q6Q788 366 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 C3orf67Q6ZVT6 689 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 NAPBQ9H115 298 aa21.64■■□□□ 1.05
PRPF40B-208ENST00000548436 ME1P48163 572 aa21.63■■□□□ 1.05
PRPF40B-208ENST00000548436 METAP2P50579 478 aaKnown RBP eCLIP21.63■■□□□ 1.05
PRPF40B-208ENST00000548436 FAM98CQ17RN3 349 aaKnown RBP21.63■■□□□ 1.05
PRPF40B-208ENST00000548436 CLEC4GQ6UXB4 293 aa21.63■■□□□ 1.05
PRPF40B-208ENST00000548436 ENGASEQ8NFI3 743 aa21.63■■□□□ 1.05
PRPF40B-208ENST00000548436 TMEM87BQ96K49 555 aa21.63■■□□□ 1.05
PRPF40B-208ENST00000548436 TIAM2Q8IVF5 1701 aa21.63■■□□□ 1.05
PRPF40B-208ENST00000548436 KIF28PB7ZC32 967 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 CDC27P30260 824 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 LCORLQ8N3X6 602 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 FBXO41Q8TF61 875 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 TTC12Q9H892 705 aaPredicted RBP21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 LY9Q9HBG7 655 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 PCDHA7Q9UN72 937 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 CLIC4Q9Y696 253 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 DNAJC25Q9H1X3 360 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 ZSWIM5Q9P217 1185 aa21.62■■□□□ 1.05
PRPF40B-208ENST00000548436 WTIPA6NIX2 430 aaPredicted RBP21.61■■□□□ 1.05
PRPF40B-208ENST00000548436 CCDC73Q6ZRK6 1079 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 156.1 ms