RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 IMMTQ16891 758 aaKnown RBP14.62□□□□□ -0.07
RNF4-222ENST00000541204 LLPHQ9BRT6 129 aaKnown RBP14.62□□□□□ -0.07
RNF4-222ENST00000541204 BICDL1Q6ZP65 573 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 ANKRD7Q92527 254 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 USP28Q96RU2 1077 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 DENND2AQ9ULE3 1009 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 ZFYP08048 801 aaPredicted RBP14.61□□□□□ -0.07
RNF4-222ENST00000541204 TNNT1P13805 278 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 DOT1LQ8TEK3 1739 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 C8orf37Q96NL8 207 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 CDCA7Q9BWT1 371 aaPredicted RBP14.61□□□□□ -0.07
RNF4-222ENST00000541204 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.61□□□□□ -0.07
RNF4-222ENST00000541204 RCOR1Q9UKL0 485 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 LAMA4Q16363 1823 aa14.61□□□□□ -0.07
RNF4-222ENST00000541204 SPATA31A5Q5VU36 1347 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 SPATA31A7Q8IWB4 1347 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 CAMTA2O94983 1202 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 SNW1Q13573 536 aaKnown RBP14.6□□□□□ -0.07
RNF4-222ENST00000541204 ARID5BQ14865 1188 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 NAA16Q6N069 864 aaPredicted RBP14.6□□□□□ -0.07
RNF4-222ENST00000541204 PTF1AQ7RTS3 328 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 WWC3Q9ULE0 1092 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 IQSEC3Q9UPP2 1182 aaPredicted RBP14.6□□□□□ -0.07
RNF4-222ENST00000541204 SLIT2O94813 1529 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 SPDYE4A6NLX3 237 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 CAVIN2O95810 425 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 PUM3Q15397 648 aaKnown RBP14.6□□□□□ -0.07
RNF4-222ENST00000541204 FAM182BQ5T319 152 aa14.6□□□□□ -0.07
RNF4-222ENST00000541204 ZNF532Q9HCE3 1301 aa14.59□□□□□ -0.07
RNF4-222ENST00000541204 PDIA3P30101 505 aaKnown RBP14.59□□□□□ -0.07
RNF4-222ENST00000541204 STX1AQ16623 288 aa14.59□□□□□ -0.07
RNF4-222ENST00000541204 TPD52L1Q16890 204 aaPredicted RBP14.59□□□□□ -0.07
RNF4-222ENST00000541204 ERCC4Q92889 916 aaPredicted RBP14.59□□□□□ -0.07
RNF4-222ENST00000541204 CTNNA3Q9UI47 895 aa14.59□□□□□ -0.07
RNF4-222ENST00000541204 THRAP3Q9Y2W1 955 aaKnown RBP14.59□□□□□ -0.07
RNF4-222ENST00000541204 AHDC1Q5TGY3 1603 aaPredicted RBP14.59□□□□□ -0.07
RNF4-222ENST00000541204 ZNF213O14771 459 aa14.59□□□□□ -0.07
RNF4-222ENST00000541204 U2AF2P26368 475 aaKnown RBP eCLIP14.59□□□□□ -0.076e-8■□□□□ 9.9
RNF4-222ENST00000541204 CDC25BP30305 580 aa14.59□□□□□ -0.07
RNF4-222ENST00000541204 LRRC8AQ8IWT6 810 aa14.59□□□□□ -0.07
RNF4-222ENST00000541204 PRC1O43663 620 aa14.58□□□□□ -0.07
RNF4-222ENST00000541204 ADD2P35612 726 aa14.58□□□□□ -0.07
RNF4-222ENST00000541204 CCDC73Q6ZRK6 1079 aa14.58□□□□□ -0.07
RNF4-222ENST00000541204 LPIN2Q92539 896 aa14.58□□□□□ -0.07
RNF4-222ENST00000541204 FBXW7Q969H0 707 aa14.58□□□□□ -0.07
RNF4-222ENST00000541204 MYH15Q9Y2K3 1946 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 WTIPA6NIX2 430 aaPredicted RBP14.58□□□□□ -0.08
RNF4-222ENST00000541204 SMTNL1A8MU46 457 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 CTAGE5O15320 804 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 ZSCAN20P17040 1043 aaPredicted RBP14.58□□□□□ -0.08
RNF4-222ENST00000541204 ME1P48163 572 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 BCAMP50895 628 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 NCBP1Q09161 790 aaKnown RBP14.58□□□□□ -0.08
RNF4-222ENST00000541204 SARM1Q6SZW1 724 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 STK11IPQ8N1F8 1099 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 NKX2-3Q8TAU0 364 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 NGLY1Q96IV0 654 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 INCENPQ9NQS7 918 aa14.58□□□□□ -0.08
RNF4-222ENST00000541204 BECN2A8MW95 431 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 KINO60870 393 aaKnown RBP14.57□□□□□ -0.08
RNF4-222ENST00000541204 PDE6AP16499 860 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 RASGRF1Q13972 1273 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 RALYLQ86SE5 291 aaKnown RBP14.57□□□□□ -0.08
RNF4-222ENST00000541204 ILDR1Q86SU0 546 aaPredicted RBP14.57□□□□□ -0.08
RNF4-222ENST00000541204 NUP98P52948 1817 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 OTUD7BQ6GQQ9 843 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 DHX40Q8IX18 779 aaKnown RBP14.57□□□□□ -0.08
RNF4-222ENST00000541204 SPATA5Q8NB90 893 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 ENGASEQ8NFI3 743 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 ZNF592Q92610 1267 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 AGXT2Q9BYV1 514 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 BCL11BQ9C0K0 894 aaPredicted RBP14.57□□□□□ -0.08
RNF4-222ENST00000541204 MROH5Q6ZUA9 1318 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 SALL1Q9NSC2 1324 aa14.57□□□□□ -0.08
RNF4-222ENST00000541204 KLF18A0A0U1RQI7 1052 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 USP27XA6NNY8 438 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 SLC5A1P13866 664 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 FAM160A1Q05DH4 1040 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 NAA30Q147X3 362 aaPredicted RBP14.56□□□□□ -0.08
RNF4-222ENST00000541204 CCDC24Q8N4L8 307 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 MAGEB6Q8N7X4 407 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 FSIP1Q8NA03 581 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 MRFAP1L1Q96HT8 127 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 ZNF396Q96N95 335 aaPredicted RBP14.56□□□□□ -0.08
RNF4-222ENST00000541204 PLCH1Q4KWH8 1693 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 RXRAP19793 462 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 IGHMBP2P38935 993 aaKnown RBP14.56□□□□□ -0.08
RNF4-222ENST00000541204 TTF1Q15361 905 aaPredicted RBP14.56□□□□□ -0.08
RNF4-222ENST00000541204 CCDC152Q4G0S7 254 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 FILIP1Q7Z7B0 1213 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 AIDAQ96BJ3 306 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 GOLGA8BA8MQT2 603 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 NTSR2O95665 410 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 C3orf67Q6ZVT6 689 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 LINC00116Q8NCU8 138 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 CCDC112Q8NEF3 446 aa14.56□□□□□ -0.08
RNF4-222ENST00000541204 COL22A1Q8NFW1 1626 aaPredicted RBP14.55□□□□□ -0.08
RNF4-222ENST00000541204 PHLPP1O60346 1717 aa14.55□□□□□ -0.08
RNF4-222ENST00000541204 FGFR2P21802 821 aa14.55□□□□□ -0.08
RNF4-222ENST00000541204 ANTXR2P58335 489 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms