RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 RASAL3Q86YV0 1011 aa14.34□□□□□ -0.11
RTN3-209ENST00000538995 REM2Q8IYK8 340 aaPredicted RBP14.34□□□□□ -0.11
RTN3-209ENST00000538995 AKAP2Q9Y2D5 859 aa14.34□□□□□ -0.11
RTN3-209ENST00000538995 PCDHAC2Q9Y5I4 1007 aa14.34□□□□□ -0.11
RTN3-209ENST00000538995 ECM29Q5VYK3 1845 aa14.34□□□□□ -0.11
RTN3-209ENST00000538995 LBX1P52954 281 aa14.33□□□□□ -0.12
RTN3-209ENST00000538995 TTLL12Q14166 644 aaPredicted RBP14.33□□□□□ -0.12
RTN3-209ENST00000538995 SUPT20HL1Q3ZLR7 823 aa14.33□□□□□ -0.12
RTN3-209ENST00000538995 TNS4Q8IZW8 715 aa14.33□□□□□ -0.12
RTN3-209ENST00000538995 TEKT1Q969V4 418 aa14.33□□□□□ -0.12
RTN3-209ENST00000538995 VEZTQ9HBM0 779 aa14.33□□□□□ -0.12
RTN3-209ENST00000538995 PDS5AQ29RF7 1337 aaKnown RBP14.33□□□□□ -0.12
RTN3-209ENST00000538995 SALL1Q9NSC2 1324 aa14.33□□□□□ -0.12
RTN3-209ENST00000538995 UNCXA6NJT0 531 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 GRIK5Q16478 980 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 MAP3K11Q16584 847 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 ITPRIPQ8IWB1 547 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 ZDHHC15Q96MV8 337 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 SAGE1Q9NXZ1 904 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 ZNF70Q9UC06 446 aaPredicted RBP14.32□□□□□ -0.12
RTN3-209ENST00000538995 DENND2AQ9ULE3 1009 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 AOX1Q06278 1338 aa14.32□□□□□ -0.12
RTN3-209ENST00000538995 SSC5DA1L4H1 1573 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 PNMA6EA0A0J9YXQ4 647 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 UBE2Q2LH0YL09 131 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 PPP1R12BO60237 982 aaPredicted RBP14.31□□□□□ -0.12
RTN3-209ENST00000538995 MS4A1P11836 297 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 RLBP1P12271 317 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 KIF23Q02241 960 aaPredicted RBP14.31□□□□□ -0.12
RTN3-209ENST00000538995 POLA2Q14181 598 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 RASA3Q14644 834 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 MVPQ14764 893 aaKnown RBP14.31□□□□□ -0.12
RTN3-209ENST00000538995 LDLRAD1Q5T700 205 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 HHIPL2Q6UWX4 724 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 MOB2Q70IA6 237 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 ZIC5Q96T25 663 aa14.31□□□□□ -0.12
RTN3-209ENST00000538995 A0A1B0GUL7 405 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 ZBTB7BO15156 539 aaPredicted RBP14.3□□□□□ -0.12
RTN3-209ENST00000538995 PHKA1P46020 1223 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 TNNI2P48788 182 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 TFCP2Q12800 502 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 FKBP1CQ5VVH2 108 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 CCDC102BQ68D86 513 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 ZGPATQ8N5A5 531 aaKnown RBP14.3□□□□□ -0.12
RTN3-209ENST00000538995 SSH3Q8TE77 659 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 TDRD3Q9H7E2 651 aaKnown RBP14.3□□□□□ -0.12
RTN3-209ENST00000538995 TMOD2Q9NZR1 351 aa14.3□□□□□ -0.12
RTN3-209ENST00000538995 ADORA1P30542 326 aa14.29□□□□□ -0.12
RTN3-209ENST00000538995 ATP8B2P98198 1209 aa14.29□□□□□ -0.12
RTN3-209ENST00000538995 G3BP1Q13283 466 aaKnown RBP eCLIP14.29□□□□□ -0.12
RTN3-209ENST00000538995 ANGEL1Q9UNK9 670 aaKnown RBP14.29□□□□□ -0.12
RTN3-209ENST00000538995 LDHBP07195 334 aaKnown RBP14.28□□□□□ -0.12
RTN3-209ENST00000538995 IREB2P48200 963 aaKnown RBP14.28□□□□□ -0.12
RTN3-209ENST00000538995 TIMM10P62072 90 aa14.28□□□□□ -0.12
RTN3-209ENST00000538995 RASGRF1Q13972 1273 aa14.28□□□□□ -0.12
RTN3-209ENST00000538995 NBPF12Q5TAG4 269 aaPredicted RBP14.28□□□□□ -0.12
RTN3-209ENST00000538995 APOBEC3HQ6NTF7 200 aaKnown RBP14.28□□□□□ -0.12
RTN3-209ENST00000538995 FAM83AQ86UY5 434 aa14.28□□□□□ -0.12
RTN3-209ENST00000538995 XAGE2Q96GT9 111 aa14.28□□□□□ -0.12
RTN3-209ENST00000538995 CSRNP1Q96S65 589 aa14.28□□□□□ -0.12
RTN3-209ENST00000538995 RPAP1Q9BWH6 1393 aaPredicted RBP14.28□□□□□ -0.12
RTN3-209ENST00000538995 GPR108Q9NPR9 543 aa14.28□□□□□ -0.12
RTN3-209ENST00000538995 TCP10L2B9ZVM9 353 aa14.27□□□□□ -0.13
RTN3-209ENST00000538995 PRDX5P30044 214 aa14.27□□□□□ -0.13
RTN3-209ENST00000538995 PRKG1Q13976 671 aa14.27□□□□□ -0.13
RTN3-209ENST00000538995 TEPSINQ96N21 525 aa14.27□□□□□ -0.13
RTN3-209ENST00000538995 MYH13Q9UKX3 1938 aa14.27□□□□□ -0.13
RTN3-209ENST00000538995 SREBF2Q12772 1141 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 SPRYD7Q5W111 196 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 PANK1Q8TE04 598 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 HOOK2Q96ED9 719 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 C1orf115Q9H7X2 142 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 RNF186Q9NXI6 227 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 TSKSQ9UJT2 592 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 RCAN3Q9UKA8 241 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 NOP58Q9Y2X3 529 aaKnown RBP14.26□□□□□ -0.13
RTN3-209ENST00000538995 DAGLAQ9Y4D2 1042 aa14.26□□□□□ -0.13
RTN3-209ENST00000538995 ZBTB48P10074 688 aaPredicted RBP14.25□□□□□ -0.13
RTN3-209ENST00000538995 ARID4AP29374 1257 aaPredicted RBP14.25□□□□□ -0.13
RTN3-209ENST00000538995 OS9Q13438 667 aaPredicted RBP14.25□□□□□ -0.13
RTN3-209ENST00000538995 GORABQ5T7V8 394 aa14.25□□□□□ -0.13
RTN3-209ENST00000538995 SPTY2D1Q68D10 685 aaPredicted RBP14.25□□□□□ -0.13
RTN3-209ENST00000538995 CEP85Q6P2H3 762 aa14.25□□□□□ -0.13
RTN3-209ENST00000538995 SLF2Q8IX21 1173 aa14.25□□□□□ -0.13
RTN3-209ENST00000538995 ANKRD13AQ8IZ07 590 aa14.25□□□□□ -0.13
RTN3-209ENST00000538995 NEUROD6Q96NK8 337 aa14.25□□□□□ -0.13
RTN3-209ENST00000538995 TMEM39BQ9GZU3 492 aa14.25□□□□□ -0.13
RTN3-209ENST00000538995 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.25□□□□□ -0.13
RTN3-209ENST00000538995 GAKO14976 1311 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 USP2O75604 605 aaPredicted RBP14.24□□□□□ -0.13
RTN3-209ENST00000538995 SURF6O75683 361 aaKnown RBP14.24□□□□□ -0.13
RTN3-209ENST00000538995 UQCRFS1P1P0C7P4 283 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 TM4SF4P48230 202 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 DIXDC1Q155Q3 683 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 TNNI3KQ59H18 835 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 DZIP1Q86YF9 867 aaKnown RBP14.24□□□□□ -0.13
RTN3-209ENST00000538995 SLC10A4Q96EP9 437 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 CHMP4BQ9H444 224 aaKnown RBP14.24□□□□□ -0.13
RTN3-209ENST00000538995 DDX19BQ9UMR2 479 aa14.24□□□□□ -0.13
RTN3-209ENST00000538995 FZD1Q9UP38 647 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms