RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 NBPF12Q5TAG4 269 aaPredicted RBP10.26□□□□□ -0.77
NEDD8-207ENST00000533242 ANKRD13AQ8IZ07 590 aa10.26□□□□□ -0.77
NEDD8-207ENST00000533242 CLRN2A0PK11 232 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 ANKRD18BA2A2Z9 1011 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 EN2P19622 333 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-207ENST00000533242 ARHGEF6Q15052 776 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 ZNF804AQ7Z570 1209 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 TMEM106CQ9BVX2 250 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 MYH16Q9H6N6 1097 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 PCDHAC2Q9Y5I4 1007 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 EXOSC9Q06265 439 aaKnown RBP10.25□□□□□ -0.77
NEDD8-207ENST00000533242 G2E3Q7L622 706 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 PRMT6Q96LA8 375 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-207ENST00000533242 PTPN18Q99952 460 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 VEZTQ9HBM0 779 aa10.25□□□□□ -0.77
NEDD8-207ENST00000533242 FXR1P51114 621 aaKnown RBP eCLIP10.24□□□□□ -0.77
NEDD8-207ENST00000533242 F8W031 263 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-207ENST00000533242 SEC24BO95487 1268 aa10.24□□□□□ -0.77
NEDD8-207ENST00000533242 TNFAIP1Q13829 316 aa10.24□□□□□ -0.77
NEDD8-207ENST00000533242 RASA3Q14644 834 aa10.24□□□□□ -0.77
NEDD8-207ENST00000533242 ZNF333Q96JL9 665 aa10.24□□□□□ -0.77
NEDD8-207ENST00000533242 DEKP35659 375 aaKnown RBP10.23□□□□□ -0.77
NEDD8-207ENST00000533242 LINS1Q8NG48 757 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 OPTNQ96CV9 577 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 ELP3Q9H9T3 547 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 AOX1Q06278 1338 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 FAM205AQ6ZU69 1335 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 TAF5LO75529 589 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 SLC4A2P04920 1241 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 CAP1Q01518 475 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 TWISTNBQ3B726 338 aaPredicted RBP10.23□□□□□ -0.77
NEDD8-207ENST00000533242 SPDYE2Q495Y8 402 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 NBPF11Q86T75 865 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 HELBQ8NG08 1087 aaPredicted RBP10.23□□□□□ -0.77
NEDD8-207ENST00000533242 DNAAF4Q8WXU2 420 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 MS4A4AQ96JQ5 239 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 ZFYVE28Q9HCC9 887 aa10.23□□□□□ -0.77
NEDD8-207ENST00000533242 ZNF70Q9UC06 446 aaPredicted RBP10.23□□□□□ -0.77
NEDD8-207ENST00000533242 SNAP23O00161 211 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 RBM5P52756 815 aaKnown RBP eCLIP10.22□□□□□ -0.77
NEDD8-207ENST00000533242 IFIT5Q13325 482 aaKnown RBP10.22□□□□□ -0.77
NEDD8-207ENST00000533242 SSH1Q8WYL5 1049 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 ZSWIM8A7E2V4 1837 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 GTF2A2P52657 109 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 FOXO4P98177 505 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 FLIIQ13045 1269 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 TAF1CQ15572 869 aaPredicted RBP10.22□□□□□ -0.77
NEDD8-207ENST00000533242 SLC9C1Q4G0N8 1177 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 NCBP3Q53F19 620 aaKnown RBP10.22□□□□□ -0.77
NEDD8-207ENST00000533242 BRI3BPQ8WY22 251 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 PTCH2Q9Y6C5 1203 aa10.22□□□□□ -0.77
NEDD8-207ENST00000533242 CCL15-CCL14A0A0B4J2E2 113 aa10.21□□□□□ -0.77
NEDD8-207ENST00000533242 TRIM27P14373 513 aa10.21□□□□□ -0.77
NEDD8-207ENST00000533242 MAP3K9P80192 1104 aa10.21□□□□□ -0.77
NEDD8-207ENST00000533242 CCL15Q16663 113 aa10.21□□□□□ -0.77
NEDD8-207ENST00000533242 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.21□□□□□ -0.77
NEDD8-207ENST00000533242 TEPSINQ96N21 525 aa10.21□□□□□ -0.77
NEDD8-207ENST00000533242 SERPINA10Q9UK55 444 aa10.21□□□□□ -0.77
NEDD8-207ENST00000533242 COLQQ9Y215 455 aaPredicted RBP10.21□□□□□ -0.77
NEDD8-207ENST00000533242 KIAA0100Q14667 2235 aaKnown RBP10.21□□□□□ -0.78
NEDD8-207ENST00000533242 FKBP5Q13451 457 aaPredicted RBP10.21□□□□□ -0.78
NEDD8-207ENST00000533242 SLC4A8Q2Y0W8 1093 aa10.21□□□□□ -0.78
NEDD8-207ENST00000533242 TDRD7Q8NHU6 1098 aaKnown RBP10.21□□□□□ -0.78
NEDD8-207ENST00000533242 ZCCHC17Q9NP64 241 aaKnown RBP10.21□□□□□ -0.78
NEDD8-207ENST00000533242 IL16Q14005 1332 aa10.2□□□□□ -0.78
NEDD8-207ENST00000533242 TNNI2P48788 182 aa10.2□□□□□ -0.78
NEDD8-207ENST00000533242 MVPQ14764 893 aaKnown RBP10.2□□□□□ -0.78
NEDD8-207ENST00000533242 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.2□□□□□ -0.782e-13■■□□□ 14.4
NEDD8-207ENST00000533242 TDRD3Q9H7E2 651 aaKnown RBP10.2□□□□□ -0.78
NEDD8-207ENST00000533242 SMC4Q9NTJ3 1288 aa10.2□□□□□ -0.78
NEDD8-207ENST00000533242 JAG2Q9Y219 1238 aa10.2□□□□□ -0.78
NEDD8-207ENST00000533242 CSADQ9Y600 493 aa10.2□□□□□ -0.78
NEDD8-207ENST00000533242 WDHD1O75717 1129 aaPredicted RBP10.19□□□□□ -0.78
NEDD8-207ENST00000533242 PRMT2P55345 433 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 VGLL4Q14135 290 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 FAM43AQ8N2R8 423 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 TTF2Q9UNY4 1162 aaKnown RBP10.19□□□□□ -0.78
NEDD8-207ENST00000533242 CHMP3Q9Y3E7 222 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 GNRH1P01148 92 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 KIF22Q14807 665 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 MFSD14BQ5SR56 506 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 ZKSCAN2Q63HK3 967 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 DZIP1LQ8IYY4 767 aaKnown RBP10.19□□□□□ -0.78
NEDD8-207ENST00000533242 CNKSR2Q8WXI2 1034 aa10.19□□□□□ -0.78
NEDD8-207ENST00000533242 SPDYE5A6NIY4 337 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 ZBTB22O15209 634 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 CETPP11597 493 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 CRKP46108 304 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 UBE4AQ14139 1066 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 CCDC57Q2TAC2 916 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 TAF7LQ5H9L4 462 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 LDHAL6AQ6ZMR3 332 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 CNNM1Q9NRU3 951 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 NOB1Q9ULX3 412 aaKnown RBP10.18□□□□□ -0.78
NEDD8-207ENST00000533242 TCP10L2B9ZVM9 353 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 H0YGN5 161 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 HIBADHP31937 336 aaKnown RBP10.18□□□□□ -0.78
NEDD8-207ENST00000533242 LMBR1LQ6UX01 489 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 CDAN1Q8IWY9 1227 aa10.18□□□□□ -0.78
NEDD8-207ENST00000533242 OTUD5Q96G74 571 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms