RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 SF3A1Q15459 793 aaKnown RBP22.41■■□□□ 1.18
VPS28-213ENST00000530983 TAF7LQ5H9L4 462 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 FILIP1Q7Z7B0 1213 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 KIAA1468Q9P260 1216 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 PAXBP1Q9Y5B6 917 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 ZNF213O14771 459 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 SKILP12757 684 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 CCZ1BP86790 482 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 CCZ1P86791 482 aaPredicted RBP22.41■■□□□ 1.18
VPS28-213ENST00000530983 DPCR1Q3MIW9 517 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 RALYLQ86SE5 291 aaKnown RBP22.41■■□□□ 1.18
VPS28-213ENST00000530983 WDR19Q8NEZ3 1342 aa22.41■■□□□ 1.18
VPS28-213ENST00000530983 CCDC69A6NI79 296 aa22.4■■□□□ 1.18
VPS28-213ENST00000530983 ZBTB38Q8NAP3 1195 aaPredicted RBP22.4■■□□□ 1.18
VPS28-213ENST00000530983 GTPBP4Q9BZE4 634 aaKnown RBP22.4■■□□□ 1.18
VPS28-213ENST00000530983 NBPF3Q9H094 633 aa22.4■■□□□ 1.18
VPS28-213ENST00000530983 MYO5AQ9Y4I1 1855 aaKnown RBP22.4■■□□□ 1.18
VPS28-213ENST00000530983 CPLX1O14810 134 aa22.4■■□□□ 1.18
VPS28-213ENST00000530983 MCAMP43121 646 aa22.4■■□□□ 1.18
VPS28-213ENST00000530983 KIF23Q02241 960 aaPredicted RBP22.39■■□□□ 1.17
VPS28-213ENST00000530983 NBPF11Q86T75 865 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 SPDYE4A6NLX3 237 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 SYCP1Q15431 976 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 CEP135Q66GS9 1140 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 BRINP3Q76B58 766 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 SYNE4Q8N205 404 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 CARD10Q9BWT7 1032 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 DENND2AQ9ULE3 1009 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 RIPOR2Q9Y4F9 1068 aa22.39■■□□□ 1.17
VPS28-213ENST00000530983 AXDND1Q5T1B0 1012 aaPredicted RBP22.38■■□□□ 1.17
VPS28-213ENST00000530983 NYAP1Q6ZVC0 841 aa22.38■■□□□ 1.17
VPS28-213ENST00000530983 NKX2-3Q8TAU0 364 aa22.38■■□□□ 1.17
VPS28-213ENST00000530983 BPIFA3Q9BQP9 254 aa22.38■■□□□ 1.17
VPS28-213ENST00000530983 ANO1Q5XXA6 986 aa22.37■■□□□ 1.17
VPS28-213ENST00000530983 CCDC112Q8NEF3 446 aa22.37■■□□□ 1.17
VPS28-213ENST00000530983 XIRP1Q702N8 1843 aaKnown RBP22.37■■□□□ 1.17
VPS28-213ENST00000530983 METTL24Q5JXM2 366 aa22.37■■□□□ 1.17
VPS28-213ENST00000530983 KIF6Q6ZMV9 814 aa22.37■■□□□ 1.17
VPS28-213ENST00000530983 SYNE3Q6ZMZ3 975 aa22.37■■□□□ 1.17
VPS28-213ENST00000530983 ATRNO75882 1429 aa22.36■■□□□ 1.17
VPS28-213ENST00000530983 ZNF202O95125 648 aa22.36■■□□□ 1.17
VPS28-213ENST00000530983 ADD2P35612 726 aa22.36■■□□□ 1.17
VPS28-213ENST00000530983 DNAJC10Q8IXB1 793 aa22.36■■□□□ 1.17
VPS28-213ENST00000530983 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.36■■□□□ 1.172e-7■■■■□ 23.7
VPS28-213ENST00000530983 TBC1D10CQ8IV04 446 aa22.36■■□□□ 1.17
VPS28-213ENST00000530983 OSBPL5Q9H0X9 879 aaPredicted RBP22.36■■□□□ 1.17
VPS28-213ENST00000530983 TMOD3Q9NYL9 352 aa22.36■■□□□ 1.17
VPS28-213ENST00000530983 ECM29Q5VYK3 1845 aa22.36■■□□□ 1.17
VPS28-213ENST00000530983 MROH7-TTC4A0A0A0MT08 1334 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 ZMYM6O95789 1325 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 MYH3P11055 1940 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 SLC3A2P08195 630 aaKnown RBP22.35■■□□□ 1.17
VPS28-213ENST00000530983 PFKFB1P16118 471 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 LDHAL6AQ6ZMR3 332 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 GREM2Q9H772 168 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 PODXL2Q9NZ53 605 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 ITGA6P23229 1130 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 CMA1P23946 247 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 U2AF2P26368 475 aaKnown RBP eCLIP22.35■■□□□ 1.17
VPS28-213ENST00000530983 ZRSR1Q15695 479 aaKnown RBP22.35■■□□□ 1.17
VPS28-213ENST00000530983 SLC9C2Q5TAH2 1124 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 CYB5R4Q7L1T6 521 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 TTLL11Q8NHH1 800 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 ZNF592Q92610 1267 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 AIFM3Q96NN9 605 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 ASAP1Q9ULH1 1129 aa22.35■■□□□ 1.17
VPS28-213ENST00000530983 ANGEL1Q9UNK9 670 aaKnown RBP22.35■■□□□ 1.17
VPS28-213ENST00000530983 CDHR2Q9BYE9 1310 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 WDHD1O75717 1129 aaPredicted RBP22.34■■□□□ 1.17
VPS28-213ENST00000530983 GSDMDP57764 484 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 ABCA3Q99758 1704 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 BIN1O00499 593 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 TRDNQ13061 729 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 NAA30Q147X3 362 aaPredicted RBP22.34■■□□□ 1.17
VPS28-213ENST00000530983 PTPN14Q15678 1187 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 GIGYF2Q6Y7W6 1299 aaKnown RBP22.34■■□□□ 1.17
VPS28-213ENST00000530983 CCAR2Q8N163 923 aaKnown RBP22.34■■□□□ 1.17
VPS28-213ENST00000530983 VGLL2Q8N8G2 317 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 RGS22Q8NE09 1264 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 KCND1Q9NSA2 647 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 IMPACTQ9P2X3 320 aa22.34■■□□□ 1.17
VPS28-213ENST00000530983 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.33■■□□□ 1.17
VPS28-213ENST00000530983 MAP3K15Q6ZN16 1313 aa22.33■■□□□ 1.17
VPS28-213ENST00000530983 NLRP12P59046 1061 aa22.33■■□□□ 1.17
VPS28-213ENST00000530983 SLC39A14Q15043 492 aa22.33■■□□□ 1.17
VPS28-213ENST00000530983 HLFQ16534 295 aa22.33■■□□□ 1.17
VPS28-213ENST00000530983 ZNF512BQ96KM6 892 aaPredicted RBP22.33■■□□□ 1.17
VPS28-213ENST00000530983 XPO4Q9C0E2 1151 aaKnown RBP22.33■■□□□ 1.17
VPS28-213ENST00000530983 PIH1D3Q9NQM4 214 aaKnown RBP22.33■■□□□ 1.17
VPS28-213ENST00000530983 SH2B2O14492 632 aaPredicted RBP22.32■■□□□ 1.16
VPS28-213ENST00000530983 STRN4Q9NRL3 753 aa22.32■■□□□ 1.16
VPS28-213ENST00000530983 TRMT1Q9NXH9 659 aaKnown RBP22.32■■□□□ 1.16
VPS28-213ENST00000530983 SOS2Q07890 1332 aaPredicted RBP22.32■■□□□ 1.16
VPS28-213ENST00000530983 GPTP24298 496 aa22.32■■□□□ 1.16
VPS28-213ENST00000530983 METAP2P50579 478 aaKnown RBP eCLIP22.32■■□□□ 1.16
VPS28-213ENST00000530983 NCAPHQ15003 741 aa22.32■■□□□ 1.16
VPS28-213ENST00000530983 NLRP10Q86W26 655 aa22.32■■□□□ 1.16
VPS28-213ENST00000530983 ALG1Q9BT22 464 aa22.32■■□□□ 1.16
VPS28-213ENST00000530983 KIF20AO95235 890 aa22.31■■□□□ 1.16
VPS28-213ENST00000530983 RXRAP19793 462 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms