RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 TBC1D8O95759 1140 aa16.43■□□□□ 0.22
USP48-213ENST00000529637 OAS2P29728 719 aaKnown RBP16.43■□□□□ 0.22
USP48-213ENST00000529637 SDF4Q9BRK5 362 aa16.43■□□□□ 0.22
USP48-213ENST00000529637 HELLSQ9NRZ9 838 aa16.43■□□□□ 0.22
USP48-213ENST00000529637 PSDA5PKW4 1024 aaPredicted RBP16.42■□□□□ 0.22
USP48-213ENST00000529637 CTDNEP1O95476 244 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 ILDR1Q86SU0 546 aaPredicted RBP16.42■□□□□ 0.22
USP48-213ENST00000529637 CCDC191Q8NCU4 936 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 MST1RQ04912 1400 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 MAST3O60307 1309 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 SPATA31A3Q5VYP0 1347 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 GPTP24298 496 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 ADORA1P30542 326 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 SIPA1L3O60292 1781 aaPredicted RBP16.42■□□□□ 0.22
USP48-213ENST00000529637 SH3TC1Q8TE82 1336 aa16.42■□□□□ 0.22
USP48-213ENST00000529637 TADA3O75528 432 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 ATP1A3P13637 1013 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 ZMYM1Q5SVZ6 1142 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 NSUN7Q8NE18 718 aaKnown RBP16.41■□□□□ 0.22
USP48-213ENST00000529637 GPHNQ9NQX3 736 aaPredicted RBP16.41■□□□□ 0.22
USP48-213ENST00000529637 IMPACTQ9P2X3 320 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 TRPM3Q9HCF6 1732 aaPredicted RBP16.41■□□□□ 0.22
USP48-213ENST00000529637 SCN11AQ9UI33 1791 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 PFKFB2O60825 505 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 NDUFA8P51970 172 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 MNS1Q8NEH6 495 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 UBXN6Q9BZV1 441 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 PCDHA7Q9UN72 937 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 LMOD1P29536 600 aaPredicted RBP16.41■□□□□ 0.22
USP48-213ENST00000529637 TEX35Q5T0J7 233 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 FMR1NBQ8N0W7 255 aaPredicted RBP16.41■□□□□ 0.22
USP48-213ENST00000529637 TNS3Q68CZ2 1445 aa16.41■□□□□ 0.22
USP48-213ENST00000529637 AFDNP55196 1824 aaKnown RBP16.4■□□□□ 0.22
USP48-213ENST00000529637 M0R2C6 588 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 OTUD7BQ6GQQ9 843 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 C10orf67Q8IYJ2 551 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 DSCC1Q9BVC3 393 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 RSPH14Q9UHP6 348 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 SF3A1Q15459 793 aaKnown RBP16.4■□□□□ 0.22
USP48-213ENST00000529637 PI16Q6UXB8 463 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 OSBP2Q969R2 916 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 ARGLU1Q9NWB6 273 aaPredicted RBP16.4■□□□□ 0.22
USP48-213ENST00000529637 IL2RBP14784 551 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 EVCP57679 992 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 TPM4P67936 248 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 REXO1L1PQ8IX06 675 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 CCDC150Q8NCX0 1101 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 SMARCC2Q8TAQ2 1214 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 NAT10Q9H0A0 1025 aaKnown RBP16.4■□□□□ 0.22
USP48-213ENST00000529637 TMOD3Q9NYL9 352 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 PARP3Q9Y6F1 533 aa16.4■□□□□ 0.22
USP48-213ENST00000529637 ZNF142P52746 1687 aaPredicted RBP16.4■□□□□ 0.22
USP48-213ENST00000529637 JCADQ9P266 1359 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 SMC1AQ14683 1233 aaKnown RBP16.39■□□□□ 0.21
USP48-213ENST00000529637 NCAPHQ15003 741 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 ZSCAN26Q16670 478 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 DPF2Q92785 391 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 XAGE2Q96GT9 111 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 UTP14AQ9BVJ6 771 aaKnown RBP16.39■□□□□ 0.21
USP48-213ENST00000529637 NEDD4P46934 1319 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 CPLX1O14810 134 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 KIF6Q6ZMV9 814 aa16.39■□□□□ 0.21
USP48-213ENST00000529637 APPP05067 770 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 IFIT5Q13325 482 aaKnown RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 CC2D1AQ6P1N0 951 aaPredicted RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 RALYLQ86SE5 291 aaKnown RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 TXLNBQ8N3L3 684 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 ZNF396Q96N95 335 aaPredicted RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 KIAA1468Q9P260 1216 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 WDR17Q8IZU2 1322 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 ERVV-2B6SEH9 535 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 POLR3DP05423 398 aaPredicted RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 IMMTQ16891 758 aaKnown RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 LRRFIP1Q32MZ4 808 aaKnown RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 SYNE4Q8N205 404 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 LLPHQ9BRT6 129 aaKnown RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 RFX7Q2KHR2 1363 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 PDIA3P30101 505 aaKnown RBP16.38■□□□□ 0.21
USP48-213ENST00000529637 METTL24Q5JXM2 366 aa16.38■□□□□ 0.21
USP48-213ENST00000529637 KIF1AQ12756 1690 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 MYO1CO00159 1063 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 ZAP70P43403 619 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 ZRSR1Q15695 479 aaKnown RBP16.37■□□□□ 0.21
USP48-213ENST00000529637 MUM1L1Q5H9M0 696 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 DNAJC10Q8IXB1 793 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 GPR108Q9NPR9 543 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 GOLGA8BA8MQT2 603 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 SCARF1Q14162 830 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 MRPS27Q92552 414 aaKnown RBP16.37■□□□□ 0.21
USP48-213ENST00000529637 HSD3B7Q9H2F3 369 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 AKAP2Q9Y2D5 859 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 PHLPP2Q6ZVD8 1323 aa16.37■□□□□ 0.21
USP48-213ENST00000529637 PALLDQ8WX93 1383 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 KLF18A0A0U1RQI7 1052 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 WDR24Q96S15 920 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 CNNM1Q9NRU3 951 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 MRC1P22897 1456 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 CAMTA1Q9Y6Y1 1673 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 FANCCQ00597 558 aa16.36■□□□□ 0.21
USP48-213ENST00000529637 GNL2Q13823 731 aaKnown RBP16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms