RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 RPS26P11Q5JNZ5 115 aaPredicted RBP7.44□□□□□ -1.22
CD44-217ENST00000525348 ANKRD34AQ69YU3 496 aa7.44□□□□□ -1.22
CD44-217ENST00000525348 DTHD1Q6ZMT9 781 aa7.44□□□□□ -1.22
CD44-217ENST00000525348 TIAF1O95411 115 aa7.43□□□□□ -1.22
CD44-217ENST00000525348 POU4F3Q15319 338 aa7.43□□□□□ -1.22
CD44-217ENST00000525348 ALG1LQ6GMV1 187 aa7.43□□□□□ -1.22
CD44-217ENST00000525348 NPAS4Q8IUM7 802 aa7.43□□□□□ -1.22
CD44-217ENST00000525348 SMG8Q8ND04 991 aaKnown RBP7.43□□□□□ -1.22
CD44-217ENST00000525348 UTP4Q969X6 686 aaKnown RBP7.43□□□□□ -1.22
CD44-217ENST00000525348 MYRFLQ96LU7 910 aa7.43□□□□□ -1.22
CD44-217ENST00000525348 GZF1Q9H116 711 aaPredicted RBP7.43□□□□□ -1.22
CD44-217ENST00000525348 SUGCTQ9HAC7 445 aa7.43□□□□□ -1.22
CD44-217ENST00000525348 LDHBP07195 334 aaKnown RBP7.42□□□□□ -1.22
CD44-217ENST00000525348 DRD2P14416 443 aa7.42□□□□□ -1.22
CD44-217ENST00000525348 FDX2Q6P4F2 183 aa7.42□□□□□ -1.22
CD44-217ENST00000525348 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.42□□□□□ -1.22
CD44-217ENST00000525348 STK35Q8TDR2 534 aa7.42□□□□□ -1.22
CD44-217ENST00000525348 LOC100996750A0A140TA64 210 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 CYP11A1P05108 521 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 ATP2B2Q01814 1243 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 UVSSAQ2YD98 709 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 EXOSC6Q5RKV6 272 aaKnown RBP7.41□□□□□ -1.22
CD44-217ENST00000525348 NUTM2GQ5VZR2 741 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 KRTAP4-6Q9BYQ5 205 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 GPN3Q9UHW5 284 aaPredicted RBP7.41□□□□□ -1.22
CD44-217ENST00000525348 AKAP2Q9Y2D5 859 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 RAXQ9Y2V3 346 aa7.41□□□□□ -1.22
CD44-217ENST00000525348 DHX15O43143 795 aaKnown RBP7.4□□□□□ -1.22
CD44-217ENST00000525348 BMP3P12645 472 aa7.4□□□□□ -1.22
CD44-217ENST00000525348 XRCC5P13010 732 aaKnown RBP7.4□□□□□ -1.22
CD44-217ENST00000525348 FSTP19883 344 aa7.4□□□□□ -1.22
CD44-217ENST00000525348 FAM20CQ8IXL6 584 aa7.4□□□□□ -1.22
CD44-217ENST00000525348 C12orf50Q8NA57 414 aaPredicted RBP7.4□□□□□ -1.22
CD44-217ENST00000525348 C2CD4AQ8NCU7 369 aaPredicted RBP7.4□□□□□ -1.22
CD44-217ENST00000525348 CORO1BQ9BR76 489 aa7.4□□□□□ -1.22
CD44-217ENST00000525348 SART1O43290 800 aaKnown RBP7.39□□□□□ -1.23
CD44-217ENST00000525348 ADH5P11766 374 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 AP3B2Q13367 1082 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 COL19A1Q14993 1142 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 SGO2Q562F6 1265 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 PDZD3Q86UT5 571 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 ZC3H12CQ9C0D7 883 aaKnown RBP7.39□□□□□ -1.23
CD44-217ENST00000525348 CCDC86Q9H6F5 360 aaKnown RBP7.39□□□□□ -1.23
CD44-217ENST00000525348 C12orf49Q9H741 205 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 C7orf69Q9H7B7 122 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 CYP4F12Q9HCS2 524 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 PPP4R2Q9NY27 417 aa7.39□□□□□ -1.23
CD44-217ENST00000525348 HMX2A2RU54 273 aa7.38□□□□□ -1.23
CD44-217ENST00000525348 PRPF40AO75400 957 aaKnown RBP7.38□□□□□ -1.23
CD44-217ENST00000525348 FBXO24O75426 580 aa7.38□□□□□ -1.23
CD44-217ENST00000525348 GSTT1P30711 240 aa7.38□□□□□ -1.23
CD44-217ENST00000525348 SOX4Q06945 474 aaPredicted RBP7.38□□□□□ -1.23
CD44-217ENST00000525348 TRIM42Q8IWZ5 723 aa7.38□□□□□ -1.23
CD44-217ENST00000525348 DDX54Q8TDD1 881 aaKnown RBP7.38□□□□□ -1.23
CD44-217ENST00000525348 WDR89Q96FK6 387 aaPredicted RBP7.38□□□□□ -1.23
CD44-217ENST00000525348 DUSP9Q99956 384 aaKnown RBP7.38□□□□□ -1.23
CD44-217ENST00000525348 WDR18Q9BV38 432 aa7.38□□□□□ -1.23
CD44-217ENST00000525348 TMEM39AQ9NV64 488 aa7.38□□□□□ -1.23
CD44-217ENST00000525348 STOML1Q9UBI4 398 aa7.38□□□□□ -1.23
CD44-217ENST00000525348 ENC1O14682 589 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 GAS2O43903 313 aaKnown RBP7.37□□□□□ -1.23
CD44-217ENST00000525348 ZNF862O60290 1169 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 EIF4EBP3O60516 100 aaPredicted RBP7.37□□□□□ -1.23
CD44-217ENST00000525348 PAGE1O75459 146 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 USP17L7P0C7H9 530 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 LIG1P18858 919 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 TAGLNQ01995 201 aaKnown RBP7.37□□□□□ -1.23
CD44-217ENST00000525348 EAPPQ56P03 285 aaPredicted RBP7.37□□□□□ -1.23
CD44-217ENST00000525348 ZMYM1Q5SVZ6 1142 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 CDPF1Q6NVV7 123 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 TPTE2Q6XPS3 522 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 FBXO33Q7Z6M2 555 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 NECAB3Q96P71 396 aaPredicted RBP7.37□□□□□ -1.23
CD44-217ENST00000525348 SRCIN1Q9C0H9 1055 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 SPG7Q9UQ90 795 aa7.37□□□□□ -1.23
CD44-217ENST00000525348 GIPC1O14908 333 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 AOC2O75106 756 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 GSTP1P09211 210 aaKnown RBP7.36□□□□□ -1.23
CD44-217ENST00000525348 MAP4P27816 1152 aaKnown RBP7.36□□□□□ -1.23
CD44-217ENST00000525348 GNA15P30679 374 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 PDE3AQ14432 1141 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 AKAP4Q5JQC9 854 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 RASIP1Q5U651 963 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 BEND4Q6ZU67 534 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 SULF2Q8IWU5 870 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 FAM83CQ9BQN1 747 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 ZFYVE1Q9HBF4 777 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 PPP1R9AQ9ULJ8 1098 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 HIF3AQ9Y2N7 669 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 ACTL7BQ9Y614 415 aa7.36□□□□□ -1.23
CD44-217ENST00000525348 CCDC27Q2M243 656 aa7.35□□□□□ -1.23
CD44-217ENST00000525348 MPRIPQ6WCQ1 1025 aa7.35□□□□□ -1.23
CD44-217ENST00000525348 CLEC10AQ8IUN9 316 aa7.35□□□□□ -1.23
CD44-217ENST00000525348 FBLIM1Q8WUP2 373 aa7.35□□□□□ -1.23
CD44-217ENST00000525348 KCNF1Q9H3M0 494 aa7.35□□□□□ -1.23
CD44-217ENST00000525348 FAM8A1Q9UBU6 413 aa7.35□□□□□ -1.23
CD44-217ENST00000525348 IGLV1-40P01703 118 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 CELA3AP09093 270 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 NME2P22392 152 aa7.34□□□□□ -1.23
CD44-217ENST00000525348 ARNTP27540 789 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms