RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 NOGQ13253 232 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 PRKG1Q13976 671 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 COL13A1Q5TAT6 717 aaPredicted RBP25.86■■□□□ 1.73
VPS28-203ENST00000524521 CCDC102BQ68D86 513 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 SSH3Q8TE77 659 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 BEGAINQ9BUH8 593 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 ZNF70Q9UC06 446 aaPredicted RBP25.86■■□□□ 1.73
VPS28-203ENST00000524521 SUGT1Q9Y2Z0 365 aa25.86■■□□□ 1.73
VPS28-203ENST00000524521 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.86■■□□□ 1.73
VPS28-203ENST00000524521 ARAP2Q8WZ64 1704 aa25.85■■□□□ 1.73
VPS28-203ENST00000524521 TEKT1Q969V4 418 aa25.85■■□□□ 1.73
VPS28-203ENST00000524521 XAGE2Q96GT9 111 aa25.85■■□□□ 1.73
VPS28-203ENST00000524521 DENND2AQ9ULE3 1009 aa25.85■■□□□ 1.73
VPS28-203ENST00000524521 ECM29Q5VYK3 1845 aa25.84■■□□□ 1.73
VPS28-203ENST00000524521 CTCFP49711 727 aaPredicted RBP25.84■■□□□ 1.73
VPS28-203ENST00000524521 OS9Q13438 667 aaPredicted RBP25.84■■□□□ 1.73
VPS28-203ENST00000524521 SPDYE2Q495Y8 402 aa25.84■■□□□ 1.73
VPS28-203ENST00000524521 ZIC5Q96T25 663 aa25.84■■□□□ 1.73
VPS28-203ENST00000524521 MRIQ9BWK5 157 aa25.84■■□□□ 1.73
VPS28-203ENST00000524521 PPP2R3BQ9Y5P8 575 aa25.84■■□□□ 1.73
VPS28-203ENST00000524521 MAST3O60307 1309 aa25.84■■□□□ 1.73
VPS28-203ENST00000524521 MYH13Q9UKX3 1938 aa25.83■■□□□ 1.73
VPS28-203ENST00000524521 PAPPA2Q9BXP8 1791 aa25.83■■□□□ 1.73
VPS28-203ENST00000524521 FAM155AB1AL88 458 aaPredicted RBP25.83■■□□□ 1.73
VPS28-203ENST00000524521 SEMA3EO15041 775 aa25.83■■□□□ 1.73
VPS28-203ENST00000524521 SURF6O75683 361 aaKnown RBP25.83■■□□□ 1.73
VPS28-203ENST00000524521 THSD7BQ9C0I4 1608 aa25.82■■□□□ 1.72
VPS28-203ENST00000524521 RASA3Q14644 834 aa25.82■■□□□ 1.72
VPS28-203ENST00000524521 MVPQ14764 893 aaKnown RBP25.82■■□□□ 1.72
VPS28-203ENST00000524521 GORABQ5T7V8 394 aa25.82■■□□□ 1.72
VPS28-203ENST00000524521 ARMC9Q7Z3E5 817 aa25.82■■□□□ 1.72
VPS28-203ENST00000524521 COL1A1P02452 1464 aaPredicted RBP25.82■■□□□ 1.72
VPS28-203ENST00000524521 TNFAIP1Q13829 316 aa25.81■■□□□ 1.72
VPS28-203ENST00000524521 SUPT20HL1Q3ZLR7 823 aa25.81■■□□□ 1.72
VPS28-203ENST00000524521 COG6Q9Y2V7 657 aa25.81■■□□□ 1.72
VPS28-203ENST00000524521 TCP10L2B9ZVM9 353 aa25.8■■□□□ 1.72
VPS28-203ENST00000524521 LDHBP07195 334 aaKnown RBP25.8■■□□□ 1.72
VPS28-203ENST00000524521 SLC10A3P09131 477 aa25.8■■□□□ 1.72
VPS28-203ENST00000524521 KIF23Q02241 960 aaPredicted RBP25.8■■□□□ 1.72
VPS28-203ENST00000524521 NBPF12Q5TAG4 269 aaPredicted RBP25.8■■□□□ 1.72
VPS28-203ENST00000524521 HHIPL2Q6UWX4 724 aa25.8■■□□□ 1.72
VPS28-203ENST00000524521 ZDHHC15Q96MV8 337 aa25.8■■□□□ 1.72
VPS28-203ENST00000524521 ANGEL1Q9UNK9 670 aaKnown RBP25.8■■□□□ 1.72
VPS28-203ENST00000524521 PRDX5P30044 214 aa25.79■■□□□ 1.72
VPS28-203ENST00000524521 LBX1P52954 281 aa25.79■■□□□ 1.72
VPS28-203ENST00000524521 RASGRF1Q13972 1273 aa25.79■■□□□ 1.72
VPS28-203ENST00000524521 CEP85Q6P2H3 762 aa25.79■■□□□ 1.72
VPS28-203ENST00000524521 FZD1Q9UP38 647 aa25.79■■□□□ 1.72
VPS28-203ENST00000524521 TNNI2P48788 182 aa25.78■■□□□ 1.72
VPS28-203ENST00000524521 APOBEC3HQ6NTF7 200 aaKnown RBP25.78■■□□□ 1.72
VPS28-203ENST00000524521 RASAL3Q86YV0 1011 aa25.78■■□□□ 1.72
VPS28-203ENST00000524521 DDX19BQ9UMR2 479 aa25.78■■□□□ 1.72
VPS28-203ENST00000524521 SALL1Q9NSC2 1324 aa25.78■■□□□ 1.72
VPS28-203ENST00000524521 ZBTB22O15209 634 aa25.77■■□□□ 1.72
VPS28-203ENST00000524521 PPP1R12BO60237 982 aaPredicted RBP25.77■■□□□ 1.72
VPS28-203ENST00000524521 HSPA8P11142 646 aaKnown RBP25.77■■□□□ 1.72
VPS28-203ENST00000524521 CACNB3P54284 484 aa25.77■■□□□ 1.72
VPS28-203ENST00000524521 TMOD2Q9NZR1 351 aa25.77■■□□□ 1.72
VPS28-203ENST00000524521 NOP58Q9Y2X3 529 aaKnown RBP25.77■■□□□ 1.72
VPS28-203ENST00000524521 DIXDC1Q155Q3 683 aa25.76■■□□□ 1.71
VPS28-203ENST00000524521 ZGPATQ8N5A5 531 aaKnown RBP25.76■■□□□ 1.71
VPS28-203ENST00000524521 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.76■■□□□ 1.71
VPS28-203ENST00000524521 GPR108Q9NPR9 543 aa25.76■■□□□ 1.71
VPS28-203ENST00000524521 PRDM10Q9NQV6 1147 aa25.76■■□□□ 1.71
VPS28-203ENST00000524521 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.76■■□□□ 1.71
VPS28-203ENST00000524521 ABCF2Q9UG63 623 aa25.76■■□□□ 1.71
VPS28-203ENST00000524521 TNNI3KQ59H18 835 aa25.75■■□□□ 1.71
VPS28-203ENST00000524521 LDLRAD1Q5T700 205 aa25.75■■□□□ 1.71
VPS28-203ENST00000524521 TMEM39BQ9GZU3 492 aa25.75■■□□□ 1.71
VPS28-203ENST00000524521 TSKSQ9UJT2 592 aa25.75■■□□□ 1.71
VPS28-203ENST00000524521 FPGT-TNNI3KV9GXZ4 949 aa25.75■■□□□ 1.71
VPS28-203ENST00000524521 PDS5AQ29RF7 1337 aaKnown RBP25.74■■□□□ 1.71
VPS28-203ENST00000524521 DAGLAQ9Y4D2 1042 aa25.74■■□□□ 1.71
VPS28-203ENST00000524521 CA12O43570 354 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 MAP3K11Q16584 847 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 SPTY2D1Q68D10 685 aaPredicted RBP25.73■■□□□ 1.71
VPS28-203ENST00000524521 TNS4Q8IZW8 715 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 TEPSINQ96N21 525 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 CSRNP1Q96S65 589 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 CHMP4BQ9H444 224 aaKnown RBP25.73■■□□□ 1.71
VPS28-203ENST00000524521 ZBTB40Q9NUA8 1239 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 HMG20BQ9P0W2 317 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 SSC5DA1L4H1 1573 aa25.73■■□□□ 1.71
VPS28-203ENST00000524521 USP2O75604 605 aaPredicted RBP25.72■■□□□ 1.71
VPS28-203ENST00000524521 C20orf194Q5TEA3 1177 aa25.72■■□□□ 1.71
VPS28-203ENST00000524521 SPATA5Q8NB90 893 aa25.72■■□□□ 1.71
VPS28-203ENST00000524521 SLC10A4Q96EP9 437 aa25.72■■□□□ 1.71
VPS28-203ENST00000524521 UQCRFS1P1P0C7P4 283 aa25.71■■□□□ 1.71
VPS28-203ENST00000524521 ARID4AP29374 1257 aaPredicted RBP25.71■■□□□ 1.71
VPS28-203ENST00000524521 IREB2P48200 963 aaKnown RBP25.71■■□□□ 1.71
VPS28-203ENST00000524521 MKRN3Q13064 507 aaKnown RBP25.71■■□□□ 1.71
VPS28-203ENST00000524521 PDE3AQ14432 1141 aa25.71■■□□□ 1.71
VPS28-203ENST00000524521 FKBP1CQ5VVH2 108 aa25.71■■□□□ 1.71
VPS28-203ENST00000524521 PI16Q6UXB8 463 aa25.71■■□□□ 1.71
VPS28-203ENST00000524521 DZIP1Q86YF9 867 aaKnown RBP25.71■■□□□ 1.71
VPS28-203ENST00000524521 CDAN1Q8IWY9 1227 aa25.71■■□□□ 1.71
VPS28-203ENST00000524521 YTHDC1Q96MU7 727 aaKnown RBP25.71■■□□□ 1.71
VPS28-203ENST00000524521 DBNDD2Q9BQY9 259 aa25.71■■□□□ 1.71
VPS28-203ENST00000524521 EXOC6BQ9Y2D4 811 aa25.71■■□□□ 1.71
VPS28-203ENST00000524521 CCDC158Q5M9N0 1113 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms