RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ESRRAP11474 423 aaPredicted RBP11.05□□□□□ -0.64
NUP54-215ENST00000514313 SERINC3Q13530 473 aa11.05□□□□□ -0.64
NUP54-215ENST00000514313 NBPF6Q5VWK0 638 aa11.05□□□□□ -0.64
NUP54-215ENST00000514313 CCDC81Q6ZN84 652 aa11.05□□□□□ -0.64
NUP54-215ENST00000514313 ANKS3Q6ZW76 656 aa11.05□□□□□ -0.64
NUP54-215ENST00000514313 CCDC84Q86UT8 332 aaPredicted RBP11.05□□□□□ -0.64
NUP54-215ENST00000514313 GATAD2BQ8WXI9 593 aa11.05□□□□□ -0.64
NUP54-215ENST00000514313 JARID2Q92833 1246 aaPredicted RBP11.05□□□□□ -0.64
NUP54-215ENST00000514313 NBPF4Q96M43 638 aa11.05□□□□□ -0.64
NUP54-215ENST00000514313 SRRTQ9BXP5 876 aaKnown RBP11.05□□□□□ -0.64
NUP54-215ENST00000514313 IRX2Q9BZI1 471 aaPredicted RBP11.05□□□□□ -0.64
NUP54-215ENST00000514313 SH2B1Q9NRF2 756 aaPredicted RBP11.05□□□□□ -0.64
NUP54-215ENST00000514313 FRRS1LQ9P0K9 344 aa11.05□□□□□ -0.64
NUP54-215ENST00000514313 TMA7Q9Y2S6 64 aaKnown RBP11.05□□□□□ -0.64
NUP54-215ENST00000514313 FAM221AA4D161 298 aa11.04□□□□□ -0.64
NUP54-215ENST00000514313 PSAPL1Q6NUJ1 521 aa11.04□□□□□ -0.64
NUP54-215ENST00000514313 CPLX3Q8WVH0 158 aa11.04□□□□□ -0.64
NUP54-215ENST00000514313 GAL3ST3Q96A11 431 aa11.04□□□□□ -0.64
NUP54-215ENST00000514313 ANAPC16Q96DE5 110 aa11.04□□□□□ -0.64
NUP54-215ENST00000514313 PPT2Q9UMR5 302 aa11.04□□□□□ -0.64
NUP54-215ENST00000514313 CYP8B1Q9UNU6 501 aa11.04□□□□□ -0.64
NUP54-215ENST00000514313 ROBO2Q9HCK4 1378 aa11.03□□□□□ -0.64
NUP54-215ENST00000514313 NEURL1BA8MQ27 555 aa11.03□□□□□ -0.64
NUP54-215ENST00000514313 EPHA1P21709 976 aa11.03□□□□□ -0.64
NUP54-215ENST00000514313 MPP2Q14168 576 aa11.03□□□□□ -0.64
NUP54-215ENST00000514313 LLGL2Q6P1M3 1020 aa11.03□□□□□ -0.64
NUP54-215ENST00000514313 GRIN3AQ8TCU5 1115 aa11.03□□□□□ -0.64
NUP54-215ENST00000514313 HNRNPLLQ8WVV9 542 aaKnown RBP11.03□□□□□ -0.64
NUP54-215ENST00000514313 CBX8Q9HC52 389 aa11.03□□□□□ -0.64
NUP54-215ENST00000514313 TLDC2A0PJX2 215 aa11.02□□□□□ -0.65
NUP54-215ENST00000514313 GDF6Q6KF10 455 aaPredicted RBP11.02□□□□□ -0.65
NUP54-215ENST00000514313 SHDQ96IW2 340 aa11.02□□□□□ -0.65
NUP54-215ENST00000514313 CDK11AQ9UQ88 783 aaPredicted RBP11.02□□□□□ -0.65
NUP54-215ENST00000514313 TBX22Q9Y458 520 aa11.02□□□□□ -0.65
NUP54-215ENST00000514313 K7ELQ4 463 aaPredicted RBP11.01□□□□□ -0.65
NUP54-215ENST00000514313 KLF4O43474 513 aa11.01□□□□□ -0.65
NUP54-215ENST00000514313 CILPO75339 1184 aa11.01□□□□□ -0.65
NUP54-215ENST00000514313 ARNTP27540 789 aa11.01□□□□□ -0.65
NUP54-215ENST00000514313 CDC27P30260 824 aa11.01□□□□□ -0.65
NUP54-215ENST00000514313 IKBKEQ14164 716 aa11.01□□□□□ -0.65
NUP54-215ENST00000514313 LRRC14Q15048 493 aa11.01□□□□□ -0.65
NUP54-215ENST00000514313 CWF19L2Q2TBE0 894 aaKnown RBP11.01□□□□□ -0.65
NUP54-215ENST00000514313 MBIPQ9NS73 344 aa11.01□□□□□ -0.65
NUP54-215ENST00000514313 ELOA3CA0A087WX78 387 aaPredicted RBP11□□□□□ -0.65
NUP54-215ENST00000514313 ELOA3DA6NLF2 546 aaPredicted RBP11□□□□□ -0.65
NUP54-215ENST00000514313 FAM177BA6PVY3 158 aa11□□□□□ -0.65
NUP54-215ENST00000514313 LCE2BO14633 110 aa11□□□□□ -0.65
NUP54-215ENST00000514313 MAP2K3P46734 347 aa11□□□□□ -0.65
NUP54-215ENST00000514313 ZNF252P-AS1Q0IIN9 211 aa11□□□□□ -0.65
NUP54-215ENST00000514313 ELOA3BQ3SY89 546 aa11□□□□□ -0.65
NUP54-215ENST00000514313 ZNF746Q6NUN9 644 aaPredicted RBP11□□□□□ -0.65
NUP54-215ENST00000514313 REC114Q7Z4M0 266 aa11□□□□□ -0.65
NUP54-215ENST00000514313 ELOA3Q8NG57 546 aa11□□□□□ -0.65
NUP54-215ENST00000514313 PRKAG3Q9UGI9 489 aa11□□□□□ -0.65
NUP54-215ENST00000514313 GGA1Q9UJY5 639 aa11□□□□□ -0.65
NUP54-215ENST00000514313 H3BRJ5 948 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 SOX1O00570 391 aaPredicted RBP10.99□□□□□ -0.65
NUP54-215ENST00000514313 HSP90B1P14625 803 aaKnown RBP10.99□□□□□ -0.65
NUP54-215ENST00000514313 MCM4P33991 863 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 CABP4P57796 275 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 NFE2L2Q16236 605 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 PDZD3Q86UT5 571 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 JAZF1Q86VZ6 243 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 GPR161Q8N6U8 529 aaKnown RBP10.99□□□□□ -0.65
NUP54-215ENST00000514313 NUDT8Q8WV74 236 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 TTC9Q92623 222 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 EMILIN2Q9BXX0 1053 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 TRIM55Q9BYV6 548 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 BRMS1Q9HCU9 246 aa10.99□□□□□ -0.65
NUP54-215ENST00000514313 PTPN11Q06124 597 aaPredicted RBP10.98□□□□□ -0.65
NUP54-215ENST00000514313 RAB33AQ14088 237 aa10.98□□□□□ -0.65
NUP54-215ENST00000514313 HGSNATQ68CP4 663 aa10.98□□□□□ -0.65
NUP54-215ENST00000514313 KANK3Q6NY19 840 aa10.98□□□□□ -0.65
NUP54-215ENST00000514313 MPRIPQ6WCQ1 1025 aa10.98□□□□□ -0.65
NUP54-215ENST00000514313 NLGN1Q8N2Q7 840 aa10.98□□□□□ -0.65
NUP54-215ENST00000514313 FAM169BQ8N8A8 192 aa10.98□□□□□ -0.65
NUP54-215ENST00000514313 FERD3LQ96RJ6 166 aa10.98□□□□□ -0.65
NUP54-215ENST00000514313 NSFL1CQ9UNZ2 370 aaKnown RBP10.98□□□□□ -0.65
NUP54-215ENST00000514313 SMAD7O15105 426 aaKnown RBP10.97□□□□□ -0.65
NUP54-215ENST00000514313 RGS9O75916 674 aaPredicted RBP10.97□□□□□ -0.65
NUP54-215ENST00000514313 BPNT1O95861 308 aa10.97□□□□□ -0.65
NUP54-215ENST00000514313 CDC25BP30305 580 aa10.97□□□□□ -0.65
NUP54-215ENST00000514313 GRIK5Q16478 980 aa10.97□□□□□ -0.65
NUP54-215ENST00000514313 SDE2Q6IQ49 451 aa10.97□□□□□ -0.65
NUP54-215ENST00000514313 MRFAP1L1Q96HT8 127 aa10.97□□□□□ -0.65
NUP54-215ENST00000514313 SIRPGQ9P1W8 387 aa10.97□□□□□ -0.65
NUP54-215ENST00000514313 GSTP1P09211 210 aaKnown RBP10.96□□□□□ -0.65
NUP54-215ENST00000514313 ZNF165P49910 485 aa10.96□□□□□ -0.65
NUP54-215ENST00000514313 EIF6P56537 245 aaKnown RBP10.96□□□□□ -0.65
NUP54-215ENST00000514313 AP3B2Q13367 1082 aa10.96□□□□□ -0.65
NUP54-215ENST00000514313 MAP1SQ66K74 1059 aaPredicted RBP10.96□□□□□ -0.65
NUP54-215ENST00000514313 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.96□□□□□ -0.65
NUP54-215ENST00000514313 GK5Q6ZS86 529 aa10.96□□□□□ -0.65
NUP54-215ENST00000514313 MKL1Q969V6 931 aa10.96□□□□□ -0.65
NUP54-215ENST00000514313 STARD13Q9Y3M8 1113 aa10.96□□□□□ -0.65
NUP54-215ENST00000514313 IGF1RP08069 1367 aa10.95□□□□□ -0.66
NUP54-215ENST00000514313 CLCQ05315 142 aa10.95□□□□□ -0.66
NUP54-215ENST00000514313 FBXW10Q5XX13 1052 aa10.95□□□□□ -0.66
NUP54-215ENST00000514313 TXNDC11Q6PKC3 985 aa10.95□□□□□ -0.66
NUP54-215ENST00000514313 Q6ZNB5 142 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms