RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ZNF609O15014 1411 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 COL4A1P02462 1669 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 GPR162Q16538 588 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 CRY2Q49AN0 593 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 AIDAQ96BJ3 306 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 HAUS7Q99871 368 aa10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.28□□□□□ -0.76
LIMCH1-209ENST00000509277 ATP2B4P23634 1241 aa10.27□□□□□ -0.76
LIMCH1-209ENST00000509277 MFSD14BQ5SR56 506 aa10.27□□□□□ -0.76
LIMCH1-209ENST00000509277 TCEANC2Q96MN5 208 aa10.27□□□□□ -0.76
LIMCH1-209ENST00000509277 ESYT1Q9BSJ8 1104 aa10.27□□□□□ -0.76
LIMCH1-209ENST00000509277 UPF3BQ9BZI7 483 aaKnown RBP10.27□□□□□ -0.76
LIMCH1-209ENST00000509277 SCAF8Q9UPN6 1271 aaKnown RBP10.27□□□□□ -0.76
LIMCH1-209ENST00000509277 MYH3P11055 1940 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 REC8O95072 547 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 RASSF7Q02833 373 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 TTLL5Q6EMB2 1281 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 ZNF589Q86UQ0 364 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 FBXO3Q9UK99 471 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 ZNF532Q9HCE3 1301 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 KCNA4P22459 653 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 RRP12Q5JTH9 1297 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 SP8Q8IXZ3 490 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 KBTBD3Q8NAB2 608 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 ARMT1Q9H993 441 aa10.27□□□□□ -0.77
LIMCH1-209ENST00000509277 U2AF2P26368 475 aaKnown RBP eCLIP10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 NAA16Q6N069 864 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 SPC24Q8NBT2 197 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 CD209Q9NNX6 404 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 AATFQ9NY61 560 aaKnown RBP eCLIP10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 SALL3Q9BXA9 1300 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 MINDY4BA8MYZ0 360 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 CPA1P15085 419 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 FGFR2P21802 821 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 VPS53Q5VIR6 699 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 OSBPL3Q9H4L5 887 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 TTC12Q9H892 705 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 GPR108Q9NPR9 543 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 LEMD3Q9Y2U8 911 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 SCN7AQ01118 1682 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 MBD4O95243 580 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 PTH1RQ03431 593 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 CCDC93Q567U6 631 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 MTMR7Q9Y216 660 aa10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 ZBTB12Q9Y330 459 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-209ENST00000509277 TNRC6CQ9HCJ0 1690 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 LDHBP07195 334 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 MCCP23508 829 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 DYNLL1P63167 89 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 PICALMQ13492 652 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 EYA3Q99504 573 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 NOL10Q9BSC4 688 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 PUS7LQ9H0K6 701 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 GDPD2Q9HCC8 539 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 DENND2AQ9ULE3 1009 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 TUBGCP6Q96RT7 1819 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 RNF113AO15541 343 aaKnown RBP10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 PDE6AP16499 860 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 GRIK5Q16478 980 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 SMAP1Q8IYB5 467 aaPredicted RBP10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 JDP2Q8WYK2 163 aa10.25□□□□□ -0.77
LIMCH1-209ENST00000509277 HOXA10P31260 410 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 TDO2P48775 406 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 SDR42E1Q8WUS8 393 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 OSBP2Q969R2 916 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 RBSNQ9H1K0 784 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 CACNA1SQ13698 1873 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 BCORQ6W2J9 1755 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 M0R2C6 588 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 PRKAB2O43741 272 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 KDM4AO75164 1064 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 ECE2O60344 883 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 CACNB3P54284 484 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 TTF1Q15361 905 aaPredicted RBP10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 STYK1Q6J9G0 422 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 CHST3Q7LGC8 479 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 LRRC2Q9BYS8 371 aa10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 TTF2Q9UNY4 1162 aaKnown RBP10.24□□□□□ -0.77
LIMCH1-209ENST00000509277 GPAA1O43292 621 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 PPFIA3O75145 1194 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 LRRFIP1Q32MZ4 808 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 MCMDC2Q4G0Z9 681 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 PDCL2Q8N4E4 241 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 ZSCAN29Q8IWY8 852 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 DDX60Q8IY21 1712 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 DRC7Q8IY82 874 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 TAOK3Q9H2K8 898 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 TMX1Q9H3N1 280 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 SAP30BPQ9UHR5 308 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 SLC4A4Q9Y6R1 1079 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 RGL2O15211 777 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 PTGER2P43116 358 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 USP5P45974 858 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 SKOR2Q2VWA4 1001 aaPredicted RBP10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 NIM1KQ8IY84 436 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 PALD1Q9ULE6 856 aa10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 ISY1Q9ULR0 285 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 RBM8AQ9Y5S9 174 aaKnown RBP10.23□□□□□ -0.77
LIMCH1-209ENST00000509277 HIP1O00291 1037 aa10.22□□□□□ -0.77
LIMCH1-209ENST00000509277 SGSM2O43147 1006 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms