RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 CD209Q9NNX6 404 aa10.04□□□□□ -0.8
SF3A1-210ENST00000498259 PDRG1Q9NUG6 133 aa10.04□□□□□ -0.8
SF3A1-210ENST00000498259 LIMCH1Q9UPQ0 1083 aa10.04□□□□□ -0.8
SF3A1-210ENST00000498259 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-210ENST00000498259 TNRC6CQ9HCJ0 1690 aaKnown RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 TCRBV5S4A2TA0A5A2 114 aa10.03□□□□□ -0.8
SF3A1-210ENST00000498259 M0R2C6 588 aa10.03□□□□□ -0.8
SF3A1-210ENST00000498259 NPM3O75607 178 aaKnown RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 INTS4Q96HW7 963 aaKnown RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 STRBPQ96SI9 672 aaKnown RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 SEC62Q99442 399 aaKnown RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 CRNKL1Q9BZJ0 848 aaKnown RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 PUS7LQ9H0K6 701 aaKnown RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 IL25Q9H293 177 aa10.03□□□□□ -0.8
SF3A1-210ENST00000498259 CNNM2Q9H8M5 875 aa10.03□□□□□ -0.8
SF3A1-210ENST00000498259 DUOX1Q9NRD9 1551 aa10.03□□□□□ -0.8
SF3A1-210ENST00000498259 PALD1Q9ULE6 856 aa10.03□□□□□ -0.8
SF3A1-210ENST00000498259 IQSEC3Q9UPP2 1182 aaPredicted RBP10.03□□□□□ -0.8
SF3A1-210ENST00000498259 MBD4O95243 580 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 FGAP02671 866 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 TDO2P48775 406 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 FKBP1AP62942 108 aaKnown RBP10.02□□□□□ -0.81
SF3A1-210ENST00000498259 CCDC93Q567U6 631 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 CCDC129Q6ZRS4 1044 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 DHX32Q7L7V1 743 aaKnown RBP10.02□□□□□ -0.81
SF3A1-210ENST00000498259 NCOA7Q8NI08 942 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 RTFDC1Q9BY42 306 aaPredicted RBP10.02□□□□□ -0.81
SF3A1-210ENST00000498259 CHMP5Q9NZZ3 219 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 PIM2Q9P1W9 311 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 POLLQ9UGP5 575 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 WWC3Q9ULE0 1092 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 SLC4A4Q9Y6R1 1079 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 WDR19Q8NEZ3 1342 aa10.02□□□□□ -0.81
SF3A1-210ENST00000498259 CYP21A2P08686 494 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 RPS6KB1P23443 525 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 MCM5P33992 734 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 NUCB2P80303 420 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 MECOMQ03112 1051 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 SART3Q15020 963 aaKnown RBP10.01□□□□□ -0.81
SF3A1-210ENST00000498259 RASEFQ8IZ41 740 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 UPF1Q92900 1129 aaKnown RBP eCLIP10.01□□□□□ -0.81
SF3A1-210ENST00000498259 NSUN4Q96CB9 384 aaKnown RBP10.01□□□□□ -0.81
SF3A1-210ENST00000498259 UPF3BQ9BZI7 483 aaKnown RBP10.01□□□□□ -0.81
SF3A1-210ENST00000498259 KRT23Q9C075 422 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 ZNF287Q9HBT7 754 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 ATP8A2Q9NTI2 1148 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 CD2APQ9Y5K6 639 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 FAM205AQ6ZU69 1335 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 IRS2Q9Y4H2 1338 aa10.01□□□□□ -0.81
SF3A1-210ENST00000498259 C10orf71Q711Q0 1435 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 AKAP11Q9UKA4 1901 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 DHX16O60231 1041 aaKnown RBP10□□□□□ -0.81
SF3A1-210ENST00000498259 SLC4A3P48751 1232 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 MFSD14BQ5SR56 506 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 TTLL5Q6EMB2 1281 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 IFNL3Q8IZI9 196 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 FAM163AQ96GL9 167 aaPredicted RBP10□□□□□ -0.81
SF3A1-210ENST00000498259 PSMD1Q99460 953 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 MTA3Q9BTC8 594 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 KIF3AQ9Y496 699 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 CASZ1Q86V15 1759 aa10□□□□□ -0.81
SF3A1-210ENST00000498259 ERICH2A1L162 156 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 E7EWF7 191 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 RIMBP2O15034 1052 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 KLRK1P26718 216 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 MMP14P50281 582 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 AK2P54819 239 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 PPP4CP60510 307 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 DALRD3Q5D0E6 543 aaKnown RBP9.99□□□□□ -0.81
SF3A1-210ENST00000498259 STRIP1Q5VSL9 837 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 MFSD6Q6ZSS7 791 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 TXNRD3Q86VQ6 643 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 TMTC2Q8N394 836 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 FBXL16Q8N461 479 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 TMX3Q96JJ7 454 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 TTC14Q96N46 770 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 MRIQ9BWK5 157 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 ARMT1Q9H993 441 aa9.99□□□□□ -0.81
SF3A1-210ENST00000498259 ARPP21Q9UBL0 812 aaPredicted RBP9.99□□□□□ -0.81
SF3A1-210ENST00000498259 ZBTB7AO95365 584 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 PTMSP20962 102 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 CHRNA5P30532 468 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 USP5P45974 858 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 GTF2IP78347 998 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 PDE4BQ07343 736 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 KIAA2012Q0VF49 1180 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 CUL4AQ13619 759 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 ADCK5Q3MIX3 580 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 MIGA1Q8NAN2 632 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 FBXW7Q969H0 707 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 TMEM87BQ96K49 555 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 SLKQ9H2G2 1235 aaPredicted RBP9.98□□□□□ -0.81
SF3A1-210ENST00000498259 TAOK2Q9UL54 1235 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 MYO3BQ8WXR4 1341 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 LRRC37AA6NMS7 1700 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 A0A1B0GUL6 1792 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 TAF1P21675 1872 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 ANKRD31Q8N7Z5 1873 aa9.98□□□□□ -0.81
SF3A1-210ENST00000498259 MYH7P12883 1935 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 USP17L3A6NCW0 530 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 106.4 ms