RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 CCL15Q16663 113 aa17.73■□□□□ 0.43
VARS-227ENST00000489979 CCDC184Q52MB2 194 aa17.73■□□□□ 0.43
VARS-227ENST00000489979 DZIP1LQ8IYY4 767 aaKnown RBP17.73■□□□□ 0.43
VARS-227ENST00000489979 TDRD7Q8NHU6 1098 aaKnown RBP17.73■□□□□ 0.43
VARS-227ENST00000489979 TMEM39BQ9GZU3 492 aa17.73■□□□□ 0.43
VARS-227ENST00000489979 ZFYVE28Q9HCC9 887 aa17.73■□□□□ 0.43
VARS-227ENST00000489979 PTCH2Q9Y6C5 1203 aa17.73■□□□□ 0.43
VARS-227ENST00000489979 HIBADHP31937 336 aaKnown RBP17.72■□□□□ 0.43
VARS-227ENST00000489979 GYG1P46976 350 aa17.72■□□□□ 0.43
VARS-227ENST00000489979 GTF2A2P52657 109 aa17.72■□□□□ 0.43
VARS-227ENST00000489979 MAP3K9P80192 1104 aa17.72■□□□□ 0.43
VARS-227ENST00000489979 ARHGEF6Q15052 776 aa17.72■□□□□ 0.43
VARS-227ENST00000489979 SLC9C1Q4G0N8 1177 aa17.72■□□□□ 0.43
VARS-227ENST00000489979 ARAP2Q8WZ64 1704 aa17.72■□□□□ 0.43
VARS-227ENST00000489979 CRKP46108 304 aa17.71■□□□□ 0.43
VARS-227ENST00000489979 FXR1P51114 621 aaKnown RBP eCLIP17.71■□□□□ 0.439e-6■■■□□ 16.8
VARS-227ENST00000489979 UBE4AQ14139 1066 aa17.71■□□□□ 0.43
VARS-227ENST00000489979 SLC4A8Q2Y0W8 1093 aa17.71■□□□□ 0.43
VARS-227ENST00000489979 NBPF11Q86T75 865 aa17.71■□□□□ 0.43
VARS-227ENST00000489979 FAM43AQ8N2R8 423 aa17.71■□□□□ 0.43
VARS-227ENST00000489979 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.71■□□□□ 0.435e-6■□□□□ 10.2
VARS-227ENST00000489979 FAM84BQ96KN1 310 aaPredicted RBP17.71■□□□□ 0.43
VARS-227ENST00000489979 GRM8O00222 908 aa17.7■□□□□ 0.42
VARS-227ENST00000489979 TNNI2P48788 182 aa17.7■□□□□ 0.42
VARS-227ENST00000489979 OTUD5Q96G74 571 aa17.7■□□□□ 0.42
VARS-227ENST00000489979 CSADQ9Y600 493 aa17.7■□□□□ 0.42
VARS-227ENST00000489979 MYCP01106 439 aaPredicted RBP17.69■□□□□ 0.42
VARS-227ENST00000489979 EXOSC9Q06265 439 aaKnown RBP17.69■□□□□ 0.42
VARS-227ENST00000489979 GRIK5Q16478 980 aa17.69■□□□□ 0.42
VARS-227ENST00000489979 PUS3Q9BZE2 481 aaKnown RBP17.69■□□□□ 0.42
VARS-227ENST00000489979 ZSWIM8A7E2V4 1837 aa17.68■□□□□ 0.42
VARS-227ENST00000489979 C9orf78Q9NZ63 289 aaPredicted RBP17.68■□□□□ 0.42
VARS-227ENST00000489979 CEP290O15078 2479 aa17.67■□□□□ 0.42
VARS-227ENST00000489979 NCBP3Q53F19 620 aaKnown RBP17.67■□□□□ 0.42
VARS-227ENST00000489979 ARHGAP39Q9C0H5 1083 aa17.67■□□□□ 0.42
VARS-227ENST00000489979 COLQQ9Y215 455 aaPredicted RBP17.67■□□□□ 0.42
VARS-227ENST00000489979 SALL2Q9Y467 1007 aaPredicted RBP17.67■□□□□ 0.42
VARS-227ENST00000489979 SPDYE5A6NIY4 337 aa17.66■□□□□ 0.42
VARS-227ENST00000489979 WDHD1O75717 1129 aaPredicted RBP17.66■□□□□ 0.42
VARS-227ENST00000489979 CACNB3P54284 484 aa17.66■□□□□ 0.42
VARS-227ENST00000489979 CHAF1AQ13111 956 aaPredicted RBP17.66■□□□□ 0.42
VARS-227ENST00000489979 SH3TC2Q8TF17 1288 aa17.66■□□□□ 0.42
VARS-227ENST00000489979 IQSEC3Q9UPP2 1182 aaPredicted RBP17.66■□□□□ 0.42
VARS-227ENST00000489979 SNCAIPQ9Y6H5 919 aa17.66■□□□□ 0.42
VARS-227ENST00000489979 BTBD19C9JJ37 291 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 TLR2O60603 784 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 CETPP11597 493 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 LACTBP83111 547 aaPredicted RBP17.65■□□□□ 0.42
VARS-227ENST00000489979 KIF22Q14807 665 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 FBXO33Q7Z6M2 555 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 VPS37DQ86XT2 251 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 ERO1BQ86YB8 467 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 SUCLG2Q96I99 432 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 RIPOR2Q9Y4F9 1068 aa17.65■□□□□ 0.42
VARS-227ENST00000489979 TRIOBPQ9H2D6 2365 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 ALDH1L1O75891 902 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 HDLBPQ00341 1268 aaKnown RBP17.64■□□□□ 0.41
VARS-227ENST00000489979 SLC4A10Q6U841 1118 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 WDR63Q8IWG1 891 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 ZKSCAN4Q969J2 545 aaPredicted RBP17.64■□□□□ 0.41
VARS-227ENST00000489979 TEKT1Q969V4 418 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 KAZALD1Q96I82 304 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 WRNIP1Q96S55 665 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 MROH5Q6ZUA9 1318 aa17.64■□□□□ 0.41
VARS-227ENST00000489979 H0YGN5 161 aa17.63■□□□□ 0.41
VARS-227ENST00000489979 IRF6O14896 467 aa17.63■□□□□ 0.41
VARS-227ENST00000489979 FRAT2O75474 233 aaPredicted RBP17.63■□□□□ 0.41
VARS-227ENST00000489979 ECM2O94769 699 aaPredicted RBP17.63■□□□□ 0.41
VARS-227ENST00000489979 SNAPC2Q13487 334 aa17.63■□□□□ 0.41
VARS-227ENST00000489979 TBC1D22AQ8WUA7 517 aa17.63■□□□□ 0.41
VARS-227ENST00000489979 SRCIN1Q9C0H9 1055 aa17.63■□□□□ 0.41
VARS-227ENST00000489979 ZCCHC17Q9NP64 241 aaKnown RBP17.63■□□□□ 0.41
VARS-227ENST00000489979 TMOD2Q9NZR1 351 aa17.63■□□□□ 0.41
VARS-227ENST00000489979 PPIL2Q13356 520 aa17.62■□□□□ 0.41
VARS-227ENST00000489979 GNRH1P01148 92 aa17.61■□□□□ 0.41
VARS-227ENST00000489979 NBPF7P0C2Y1 421 aaPredicted RBP17.61■□□□□ 0.41
VARS-227ENST00000489979 LRRC24Q50LG9 513 aa17.61■□□□□ 0.41
VARS-227ENST00000489979 CAVIN4Q5BKX8 364 aa17.61■□□□□ 0.41
VARS-227ENST00000489979 METTL24Q5JXM2 366 aa17.61■□□□□ 0.41
VARS-227ENST00000489979 FAM83AQ86UY5 434 aa17.61■□□□□ 0.41
VARS-227ENST00000489979 ZDHHC15Q96MV8 337 aa17.61■□□□□ 0.41
VARS-227ENST00000489979 SPINK5Q9NQ38 1064 aaPredicted RBP17.61■□□□□ 0.41
VARS-227ENST00000489979 SZT2Q5T011 3432 aa17.61■□□□□ 0.41
VARS-227ENST00000489979 PRMT2P55345 433 aa17.6■□□□□ 0.41
VARS-227ENST00000489979 MTFR1Q15390 333 aa17.6■□□□□ 0.41
VARS-227ENST00000489979 APOBEC3HQ6NTF7 200 aaKnown RBP17.6■□□□□ 0.41
VARS-227ENST00000489979 C17orf99Q6UX52 265 aa17.6■□□□□ 0.41
VARS-227ENST00000489979 HOOK2Q96ED9 719 aa17.6■□□□□ 0.41
VARS-227ENST00000489979 MRIQ9BWK5 157 aa17.6■□□□□ 0.41
VARS-227ENST00000489979 BICC1Q9H694 974 aaKnown RBP17.6■□□□□ 0.41
VARS-227ENST00000489979 CTGFP29279 349 aa17.59■□□□□ 0.41
VARS-227ENST00000489979 BCAMP50895 628 aa17.59■□□□□ 0.41
VARS-227ENST00000489979 FKBP1CQ5VVH2 108 aa17.59■□□□□ 0.41
VARS-227ENST00000489979 DCAF15Q66K64 600 aa17.59■□□□□ 0.41
VARS-227ENST00000489979 MIGA2Q7L4E1 593 aa17.59■□□□□ 0.41
VARS-227ENST00000489979 ZNF341Q9BYN7 854 aa17.59■□□□□ 0.41
VARS-227ENST00000489979 CPA4Q9UI42 421 aa17.59■□□□□ 0.41
VARS-227ENST00000489979 INPP5BP32019 993 aa17.58■□□□□ 0.4
VARS-227ENST00000489979 PSMC4P43686 418 aa17.58■□□□□ 0.4
VARS-227ENST00000489979 PPATQ06203 517 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms