RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 ALX1Q15699 326 aa11.24□□□□□ -0.61
SF3B1-211ENST00000487698 TMED8Q6PL24 325 aaPredicted RBP11.24□□□□□ -0.61
SF3B1-211ENST00000487698 GPR101Q96P66 508 aaPredicted RBP11.24□□□□□ -0.61
SF3B1-211ENST00000487698 CWC22Q9HCG8 908 aaKnown RBP11.24□□□□□ -0.61
SF3B1-211ENST00000487698 RAI14Q9P0K7 980 aa11.24□□□□□ -0.61
SF3B1-211ENST00000487698 BAZ2AQ9UIF9 1905 aaKnown RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 IGSF3O75054 1194 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 FRAT2O75474 233 aaPredicted RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 LARGE1O95461 756 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 HMGB1P09429 215 aaKnown RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 IL1R1P14778 569 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 CYP7A1P22680 504 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 TOB2Q14106 344 aaPredicted RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 NFKBIBQ15653 356 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 IMMTQ16891 758 aaKnown RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 STYK1Q6J9G0 422 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 CCDC125Q86Z20 511 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 LCORLQ8N3X6 602 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 NSUN4Q96CB9 384 aaKnown RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 NBPF3Q9H094 633 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 ARMT1Q9H993 441 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 EPB41L4AQ9HCS5 686 aaPredicted RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 LAMB1P07942 1786 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 MYH2Q9UKX2 1941 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 GNAT2P19087 354 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 RAB3GAP1Q15042 981 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 ANKRD1Q15327 319 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 C2CD5Q86YS7 1000 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 ZSCAN31Q96LW9 406 aaPredicted RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 TCEANC2Q96MN5 208 aa11.23□□□□□ -0.61
SF3B1-211ENST00000487698 RIOK1Q9BRS2 568 aaKnown RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 ZNF646O15015 1829 aaPredicted RBP11.23□□□□□ -0.61
SF3B1-211ENST00000487698 CDK5RAP2Q96SN8 1893 aa11.22□□□□□ -0.61
SF3B1-211ENST00000487698 GSG1L2A8MUP6 293 aa11.22□□□□□ -0.61
SF3B1-211ENST00000487698 PATL2C9JE40 543 aaKnown RBP11.22□□□□□ -0.61
SF3B1-211ENST00000487698 PRDX5P30044 214 aa11.22□□□□□ -0.61
SF3B1-211ENST00000487698 EXOSC10Q01780 885 aaKnown RBP11.22□□□□□ -0.61
SF3B1-211ENST00000487698 MECOMQ03112 1051 aa11.22□□□□□ -0.61
SF3B1-211ENST00000487698 CHAF1AQ13111 956 aaPredicted RBP11.22□□□□□ -0.61
SF3B1-211ENST00000487698 WDR66Q8TBY9 1149 aa11.22□□□□□ -0.61
SF3B1-211ENST00000487698 CD209Q9NNX6 404 aa11.22□□□□□ -0.61
SF3B1-211ENST00000487698 SH2B1Q9NRF2 756 aaPredicted RBP11.22□□□□□ -0.61
SF3B1-211ENST00000487698 TPCN1Q9ULQ1 816 aa11.22□□□□□ -0.61
SF3B1-211ENST00000487698 SNED1Q8TER0 1413 aa11.21□□□□□ -0.61
SF3B1-211ENST00000487698 ST3GAL1Q11201 340 aa11.21□□□□□ -0.61
SF3B1-211ENST00000487698 NAA16Q6N069 864 aaPredicted RBP11.21□□□□□ -0.61
SF3B1-211ENST00000487698 DHX32Q7L7V1 743 aaKnown RBP11.21□□□□□ -0.61
SF3B1-211ENST00000487698 IFNL3Q8IZI9 196 aa11.21□□□□□ -0.61
SF3B1-211ENST00000487698 MIGA1Q8NAN2 632 aa11.21□□□□□ -0.61
SF3B1-211ENST00000487698 SLC16A10Q8TF71 515 aa11.21□□□□□ -0.61
SF3B1-211ENST00000487698 LARP6Q9BRS8 491 aaKnown RBP11.21□□□□□ -0.61
SF3B1-211ENST00000487698 AGXT2Q9BYV1 514 aa11.21□□□□□ -0.61
SF3B1-211ENST00000487698 MAGEB6P1A0A0J9YX57 407 aa11.21□□□□□ -0.62
SF3B1-211ENST00000487698 H0YIN7 160 aa11.21□□□□□ -0.62
SF3B1-211ENST00000487698 ZNF213O14771 459 aa11.21□□□□□ -0.62
SF3B1-211ENST00000487698 HAND2P61296 217 aa11.21□□□□□ -0.62
SF3B1-211ENST00000487698 ME3Q16798 604 aa11.21□□□□□ -0.62
SF3B1-211ENST00000487698 SPTY2D1Q68D10 685 aaPredicted RBP11.21□□□□□ -0.62
SF3B1-211ENST00000487698 OLFM4Q6UX06 510 aa11.21□□□□□ -0.62
SF3B1-211ENST00000487698 PRKAB2O43741 272 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 NBR1Q14596 966 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 TBC1D10CQ8IV04 446 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 MB21D2Q8IYB1 491 aaPredicted RBP11.2□□□□□ -0.62
SF3B1-211ENST00000487698 FBXL16Q8N461 479 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 MPNDQ8N594 471 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 SLC4A4Q9Y6R1 1079 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 C6orf229H3BNL8 230 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 APPP05067 770 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 Q6ZUG5 572 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 ZNF622Q969S3 477 aaKnown RBP eCLIP11.2□□□□□ -0.624e-7■■■□□ 15.1
SF3B1-211ENST00000487698 JAG2Q9Y219 1238 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 WDR19Q8NEZ3 1342 aa11.2□□□□□ -0.62
SF3B1-211ENST00000487698 FOCADQ5VW36 1801 aa11.19□□□□□ -0.62
SF3B1-211ENST00000487698 CHRNA5P30532 468 aa11.19□□□□□ -0.62
SF3B1-211ENST00000487698 NUCB2P80303 420 aa11.19□□□□□ -0.62
SF3B1-211ENST00000487698 PKP1Q13835 747 aa11.19□□□□□ -0.62
SF3B1-211ENST00000487698 DPP8Q6V1X1 898 aaPredicted RBP11.19□□□□□ -0.62
SF3B1-211ENST00000487698 TNPO1Q92973 898 aaKnown RBP11.19□□□□□ -0.62
SF3B1-211ENST00000487698 NAPBQ9H115 298 aa11.19□□□□□ -0.62
SF3B1-211ENST00000487698 FAM205AQ6ZU69 1335 aa11.19□□□□□ -0.62
SF3B1-211ENST00000487698 DDX60LQ5H9U9 1706 aaKnown RBP11.19□□□□□ -0.62
SF3B1-211ENST00000487698 NAV1Q8NEY1 1877 aa11.19□□□□□ -0.62
SF3B1-211ENST00000487698 LDHBP07195 334 aaKnown RBP11.18□□□□□ -0.62
SF3B1-211ENST00000487698 DYNLL1P63167 89 aaKnown RBP11.18□□□□□ -0.62
SF3B1-211ENST00000487698 GRIK5Q16478 980 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 NCOA7Q8NI08 942 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 C7orf43Q8WVR3 580 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 CNKSR1Q969H4 720 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 NACAP1Q9BZK3 213 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 COA1Q9GZY4 146 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 BRCA1P38398 1863 aaKnown RBP11.18□□□□□ -0.62
SF3B1-211ENST00000487698 SCN9AQ15858 1988 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 PSME4Q14997 1843 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 ANTXR2P58335 489 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 CLEC17AQ6ZS10 378 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 DZIP1Q86YF9 867 aaKnown RBP11.18□□□□□ -0.62
SF3B1-211ENST00000487698 CCDC83Q8IWF9 413 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 BRF1Q92994 677 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 LRRC2Q9BYS8 371 aa11.18□□□□□ -0.62
SF3B1-211ENST00000487698 ZDHHC9Q9Y397 364 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms