RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 PDE6AP16499 860 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 MARCKSP29966 332 aaPredicted RBP12.62□□□□□ -0.39
VPS52-217ENST00000478934 CDC27P30260 824 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 CTDSPL2Q05D32 466 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 CCDC73Q6ZRK6 1079 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 CACTINQ8WUQ7 758 aaKnown RBP12.62□□□□□ -0.39
VPS52-217ENST00000478934 ZNF396Q96N95 335 aaPredicted RBP12.62□□□□□ -0.39
VPS52-217ENST00000478934 TEX13AQ9BXU3 409 aaPredicted RBP12.62□□□□□ -0.39
VPS52-217ENST00000478934 BCL2L12Q9HB09 334 aa12.62□□□□□ -0.39
VPS52-217ENST00000478934 IQSEC3Q9UPP2 1182 aaPredicted RBP12.62□□□□□ -0.39
VPS52-217ENST00000478934 NEDD4P46934 1319 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 BIN1O00499 593 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 KINO60870 393 aaKnown RBP12.61□□□□□ -0.39
VPS52-217ENST00000478934 SUSD4Q5VX71 490 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 LINC00301Q8NCQ3 95 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 FBXO18Q8NFZ0 1043 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 SMIM22K7EJ46 135 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 FAM160A1Q05DH4 1040 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 NAA30Q147X3 362 aaPredicted RBP12.61□□□□□ -0.39
VPS52-217ENST00000478934 ZSCAN25Q6NSZ9 544 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 SMIM5Q71RC9 77 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 MICU3Q86XE3 530 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 PRIMPOLQ96LW4 560 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 KIF3AQ9Y496 699 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 CDHR2Q9BYE9 1310 aa12.61□□□□□ -0.39
VPS52-217ENST00000478934 STK38Q15208 465 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 DHX40Q8IX18 779 aaKnown RBP12.6□□□□□ -0.39
VPS52-217ENST00000478934 FMR1NBQ8N0W7 255 aaPredicted RBP12.6□□□□□ -0.39
VPS52-217ENST00000478934 ARMT1Q9H993 441 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 FBXO3Q9UK99 471 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 SLIT2O94813 1529 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 MYO5AQ9Y4I1 1855 aaKnown RBP12.6□□□□□ -0.39
VPS52-217ENST00000478934 EXOC5O00471 708 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 RASGRF1Q13972 1273 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 SF3A1Q15459 793 aaKnown RBP12.6□□□□□ -0.39
VPS52-217ENST00000478934 MYSM1Q5VVJ2 828 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 MAGEB6Q8N7X4 407 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 ZNF592Q92610 1267 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 SDF4Q9BRK5 362 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 ZKSCAN3Q9BRR0 538 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.6□□□□□ -0.394e-7■■■■□ 25.8
VPS52-217ENST00000478934 EPB41L4AQ9HCS5 686 aaPredicted RBP12.6□□□□□ -0.39
VPS52-217ENST00000478934 RTEL1Q9NZ71 1219 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 BCL9O00512 1426 aa12.6□□□□□ -0.39
VPS52-217ENST00000478934 TCRBV5S4A2TA0A5A2 114 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 USP27XA6NNY8 438 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 PDE8AO60658 829 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 WDHD1O75717 1129 aaPredicted RBP12.59□□□□□ -0.39
VPS52-217ENST00000478934 BCAMP50895 628 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 LRRFIP1Q32MZ4 808 aaKnown RBP12.59□□□□□ -0.39
VPS52-217ENST00000478934 FILIP1Q7Z7B0 1213 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 CMTR1Q8N1G2 835 aaKnown RBP12.59□□□□□ -0.39
VPS52-217ENST00000478934 CCDC82Q8N4S0 544 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 AOPEPQ8N6M6 819 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 SPDYE4A6NLX3 237 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 GOLGA6L19H0YKK7 550 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 KCNQ4P56696 695 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 KIF23Q02241 960 aaPredicted RBP12.59□□□□□ -0.39
VPS52-217ENST00000478934 STX1AQ16623 288 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 FBXL16Q8N461 479 aa12.59□□□□□ -0.39
VPS52-217ENST00000478934 MRPS27Q92552 414 aaKnown RBP12.59□□□□□ -0.39
VPS52-217ENST00000478934 STRBPQ96SI9 672 aaKnown RBP12.59□□□□□ -0.39
VPS52-217ENST00000478934 MBD4O95243 580 aa12.58□□□□□ -0.39
VPS52-217ENST00000478934 ADAMTS2O95450 1211 aa12.58□□□□□ -0.39
VPS52-217ENST00000478934 CBX1P83916 185 aa12.58□□□□□ -0.39
VPS52-217ENST00000478934 DPCR1Q3MIW9 517 aa12.58□□□□□ -0.39
VPS52-217ENST00000478934 ZNF34Q8IZ26 560 aa12.58□□□□□ -0.39
VPS52-217ENST00000478934 MIGA1Q8NAN2 632 aa12.58□□□□□ -0.39
VPS52-217ENST00000478934 AIDAQ96BJ3 306 aa12.58□□□□□ -0.39
VPS52-217ENST00000478934 ANGEL1Q9UNK9 670 aaKnown RBP12.58□□□□□ -0.39
VPS52-217ENST00000478934 ABCA3Q99758 1704 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.58□□□□□ -0.4
VPS52-217ENST00000478934 AKAP11Q9UKA4 1901 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 KDM4FA0A1W2PPD8 638 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 SH2B2O14492 632 aaPredicted RBP12.58□□□□□ -0.4
VPS52-217ENST00000478934 SPTLC2O15270 562 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 METAP2P50579 478 aaKnown RBP eCLIP12.58□□□□□ -0.4
VPS52-217ENST00000478934 TRDNQ13061 729 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 RRP12Q5JTH9 1297 aaKnown RBP12.58□□□□□ -0.4
VPS52-217ENST00000478934 ADALQ6DHV7 355 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 SPATA5Q8NB90 893 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 ALG1Q9BT22 464 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 MROH7-TTC4A0A0A0MT08 1334 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 BECN2A8MW95 431 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 RANBP6O60518 1105 aaKnown RBP12.58□□□□□ -0.4
VPS52-217ENST00000478934 FGFR2P21802 821 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 PPP4R3BQ5MIZ7 849 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 INTS5Q6P9B9 1019 aaKnown RBP12.58□□□□□ -0.4
VPS52-217ENST00000478934 APOA5Q6Q788 366 aa12.58□□□□□ -0.4
VPS52-217ENST00000478934 FAM217BQ9NTX9 383 aaPredicted RBP12.58□□□□□ -0.4
VPS52-217ENST00000478934 GUCY1A2P33402 732 aa12.57□□□□□ -0.4
VPS52-217ENST00000478934 CHAF1AQ13111 956 aaPredicted RBP12.57□□□□□ -0.4
VPS52-217ENST00000478934 PUM3Q15397 648 aaKnown RBP12.57□□□□□ -0.4
VPS52-217ENST00000478934 AXDND1Q5T1B0 1012 aaPredicted RBP12.57□□□□□ -0.4
VPS52-217ENST00000478934 NFXL1Q6ZNB6 911 aa12.57□□□□□ -0.4
VPS52-217ENST00000478934 IGDCC4Q8TDY8 1250 aa12.57□□□□□ -0.4
VPS52-217ENST00000478934 CLIC6Q96NY7 704 aa12.57□□□□□ -0.4
VPS52-217ENST00000478934 TRMT1Q9NXH9 659 aaKnown RBP12.57□□□□□ -0.4
VPS52-217ENST00000478934 ZSWIM5Q9P217 1185 aa12.57□□□□□ -0.4
VPS52-217ENST00000478934 STRCQ7RTU9 1775 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms