RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 DIS3LQ8TF46 1054 aaKnown RBP10.56□□□□□ -0.72
USP54-211ENST00000474929 CFAP53Q96M91 514 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 CDC5LQ99459 802 aaKnown RBP10.56□□□□□ -0.72
USP54-211ENST00000474929 P2RX7Q99572 595 aaKnown RBP10.56□□□□□ -0.72
USP54-211ENST00000474929 THEGQ9P2T0 379 aa10.56□□□□□ -0.72
USP54-211ENST00000474929 BDP1A6H8Y1 2624 aa10.55□□□□□ -0.72
USP54-211ENST00000474929 CTGFP29279 349 aa10.55□□□□□ -0.72
USP54-211ENST00000474929 COPS6Q7L5N1 327 aa10.55□□□□□ -0.72
USP54-211ENST00000474929 FAM89AQ96GI7 184 aa10.55□□□□□ -0.72
USP54-211ENST00000474929 ARAP2Q8WZ64 1704 aa10.55□□□□□ -0.72
USP54-211ENST00000474929 MXD3Q9BW11 206 aa10.54□□□□□ -0.72
USP54-211ENST00000474929 PRKAG2Q9UGJ0 569 aa10.54□□□□□ -0.72
USP54-211ENST00000474929 CLRN2A0PK11 232 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 PDHXO00330 501 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 TNPO2O14787 897 aaKnown RBP10.53□□□□□ -0.72
USP54-211ENST00000474929 HMGCRP04035 888 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 FLT3LGP49771 235 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 FKBP1AP62942 108 aaKnown RBP10.53□□□□□ -0.72
USP54-211ENST00000474929 MDM2Q00987 491 aaPredicted RBP10.53□□□□□ -0.72
USP54-211ENST00000474929 PPATQ06203 517 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 DCTN1Q14203 1278 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 PDIA6Q15084 440 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 CFAP100Q494V2 611 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 PLBD2Q8NHP8 589 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 XAGE3Q8WTP9 111 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 ASB2Q96Q27 587 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 LEMD3Q9Y2U8 911 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 MUC6Q6W4X9 2439 aa10.53□□□□□ -0.72
USP54-211ENST00000474929 CDH23Q9H251 3354 aa10.52□□□□□ -0.73
USP54-211ENST00000474929 IRF6O14896 467 aa10.52□□□□□ -0.73
USP54-211ENST00000474929 BCRP11274 1271 aa10.52□□□□□ -0.73
USP54-211ENST00000474929 ELNP15502 786 aa10.52□□□□□ -0.73
USP54-211ENST00000474929 CCT4P50991 539 aaKnown RBP10.52□□□□□ -0.73
USP54-211ENST00000474929 MRPS5P82675 430 aaKnown RBP10.52□□□□□ -0.73
USP54-211ENST00000474929 AIMP1Q12904 312 aaKnown RBP10.52□□□□□ -0.73
USP54-211ENST00000474929 ZBTB38Q8NAP3 1195 aaPredicted RBP10.52□□□□□ -0.73
USP54-211ENST00000474929 COA7Q96BR5 231 aa10.52□□□□□ -0.73
USP54-211ENST00000474929 THUMPD2Q9BTF0 503 aaKnown RBP10.52□□□□□ -0.73
USP54-211ENST00000474929 ISCA1Q9BUE6 129 aa10.52□□□□□ -0.73
USP54-211ENST00000474929 HMX1Q9NP08 348 aaPredicted RBP10.52□□□□□ -0.73
USP54-211ENST00000474929 MIS18AQ9NYP9 233 aa10.52□□□□□ -0.73
USP54-211ENST00000474929 EIF2S2P20042 333 aaKnown RBP10.51□□□□□ -0.73
USP54-211ENST00000474929 GTF2IP78347 998 aa10.51□□□□□ -0.73
USP54-211ENST00000474929 TRIM28Q13263 835 aaKnown RBP10.51□□□□□ -0.73
USP54-211ENST00000474929 ALYREFQ86V81 257 aaKnown RBP10.51□□□□□ -0.73
USP54-211ENST00000474929 SEC31BQ9NQW1 1179 aa10.51□□□□□ -0.73
USP54-211ENST00000474929 OGDHLQ9ULD0 1010 aa10.51□□□□□ -0.73
USP54-211ENST00000474929 GABRQQ9UN88 632 aa10.51□□□□□ -0.73
USP54-211ENST00000474929 KCNH4Q9UQ05 1017 aa10.51□□□□□ -0.73
USP54-211ENST00000474929 SNCAIPQ9Y6H5 919 aa10.51□□□□□ -0.73
USP54-211ENST00000474929 PDE8AO60658 829 aa10.5□□□□□ -0.73
USP54-211ENST00000474929 SPDYE2Q495Y8 402 aa10.5□□□□□ -0.73
USP54-211ENST00000474929 TMEM31Q5JXX7 168 aa10.5□□□□□ -0.73
USP54-211ENST00000474929 DCAF15Q66K64 600 aa10.5□□□□□ -0.73
USP54-211ENST00000474929 WRNIP1Q96S55 665 aa10.5□□□□□ -0.73
USP54-211ENST00000474929 BSDC1Q9NW68 430 aaPredicted RBP10.5□□□□□ -0.73
USP54-211ENST00000474929 MAST2Q6P0Q8 1798 aa10.49□□□□□ -0.73
USP54-211ENST00000474929 U2AF1L5P0DN76 240 aaPredicted RBP10.49□□□□□ -0.73
USP54-211ENST00000474929 RBM5P52756 815 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP54-211ENST00000474929 U2AF1Q01081 240 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP54-211ENST00000474929 FOXK2Q01167 660 aa10.49□□□□□ -0.73
USP54-211ENST00000474929 PROSER3Q2NL68 480 aa10.49□□□□□ -0.73
USP54-211ENST00000474929 TSPYL2Q9H2G4 693 aaPredicted RBP10.49□□□□□ -0.73
USP54-211ENST00000474929 TTYH1Q9H313 450 aaPredicted RBP10.49□□□□□ -0.73
USP54-211ENST00000474929 BABAM1Q9NWV8 329 aa10.49□□□□□ -0.73
USP54-211ENST00000474929 TAOK2Q9UL54 1235 aa10.49□□□□□ -0.73
USP54-211ENST00000474929 PFASO15067 1338 aa10.49□□□□□ -0.73
USP54-211ENST00000474929 COL6A1P12109 1028 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 AAK1Q2M2I8 961 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 AKNAD1Q5T1N1 836 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 PRMT6Q96LA8 375 aaPredicted RBP10.48□□□□□ -0.73
USP54-211ENST00000474929 TEPSINQ96N21 525 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 GAS2L1Q99501 681 aaPredicted RBP10.48□□□□□ -0.73
USP54-211ENST00000474929 LRFN3Q9BTN0 628 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 ANKRD2Q9GZV1 360 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 TSPYL4Q9UJ04 414 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 SLC45A1Q9Y2W3 748 aa10.48□□□□□ -0.73
USP54-211ENST00000474929 RPAP1Q9BWH6 1393 aaPredicted RBP10.48□□□□□ -0.73
USP54-211ENST00000474929 ANXA1P04083 346 aa10.47□□□□□ -0.73
USP54-211ENST00000474929 KCNJ4P48050 445 aa10.47□□□□□ -0.73
USP54-211ENST00000474929 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.47□□□□□ -0.73
USP54-211ENST00000474929 ZNF70Q9UC06 446 aaPredicted RBP10.47□□□□□ -0.73
USP54-211ENST00000474929 SERPINA10Q9UK55 444 aa10.47□□□□□ -0.73
USP54-211ENST00000474929 MINPP1Q9UNW1 487 aa10.47□□□□□ -0.73
USP54-211ENST00000474929 PCCAP05165 728 aaPredicted RBP10.46□□□□□ -0.73
USP54-211ENST00000474929 MRE11P49959 708 aa10.46□□□□□ -0.73
USP54-211ENST00000474929 RTL5Q5HYW3 569 aaPredicted RBP10.46□□□□□ -0.73
USP54-211ENST00000474929 FASTKD5Q7L8L6 764 aaKnown RBP10.46□□□□□ -0.73
USP54-211ENST00000474929 RIC3Q7Z5B4 369 aa10.46□□□□□ -0.73
USP54-211ENST00000474929 USP38Q8NB14 1042 aa10.46□□□□□ -0.73
USP54-211ENST00000474929 SMCR8Q8TEV9 937 aaPredicted RBP10.46□□□□□ -0.73
USP54-211ENST00000474929 TMOD2Q9NZR1 351 aa10.46□□□□□ -0.73
USP54-211ENST00000474929 LTBP2Q14767 1821 aa10.46□□□□□ -0.74
USP54-211ENST00000474929 DLG5Q8TDM6 1919 aa10.46□□□□□ -0.74
USP54-211ENST00000474929 ATP5J2-PTCD1G3V325 749 aa10.45□□□□□ -0.74
USP54-211ENST00000474929 IGHMBP2P38935 993 aaKnown RBP10.45□□□□□ -0.74
USP54-211ENST00000474929 LRRC26Q2I0M4 334 aa10.45□□□□□ -0.74
USP54-211ENST00000474929 ZNF804AQ7Z570 1209 aa10.45□□□□□ -0.74
USP54-211ENST00000474929 TRMT44Q8IYL2 757 aaKnown RBP10.45□□□□□ -0.74
USP54-211ENST00000474929 ZNF341Q9BYN7 854 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms