RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 CTDSPL2Q05D32 466 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 GSE1Q14687 1217 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 EZH2Q15910 746 aaKnown RBP7.39□□□□□ -1.23
CLK1-210ENST00000473565 SDR42E1Q8WUS8 393 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 NCOA5Q9HCD5 579 aaKnown RBP7.39□□□□□ -1.23
CLK1-210ENST00000473565 GNL3LQ9NVN8 582 aaKnown RBP7.39□□□□□ -1.23
CLK1-210ENST00000473565 MYH13Q9UKX3 1938 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 DDX11L8A8MPP1 907 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 PRDX5P30044 214 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 EXOSC10Q01780 885 aaKnown RBP7.39□□□□□ -1.23
CLK1-210ENST00000473565 DDX11Q96FC9 970 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 ZSCAN31Q96LW9 406 aaPredicted RBP7.39□□□□□ -1.23
CLK1-210ENST00000473565 ANKRD2Q9GZV1 360 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 SH2B1Q9NRF2 756 aaPredicted RBP7.39□□□□□ -1.23
CLK1-210ENST00000473565 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.39□□□□□ -1.23
CLK1-210ENST00000473565 TACC3Q9Y6A5 838 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 SLC4A4Q9Y6R1 1079 aa7.39□□□□□ -1.23
CLK1-210ENST00000473565 VPS37CA5D8V6 355 aaPredicted RBP7.38□□□□□ -1.23
CLK1-210ENST00000473565 GSG1L2A8MUP6 293 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 MMP10P09238 476 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 ANTXR2P58335 489 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 EVX2Q03828 476 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 GRIK5Q16478 980 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 IFNL3Q8IZI9 196 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 PDGFDQ9GZP0 370 aaPredicted RBP7.38□□□□□ -1.23
CLK1-210ENST00000473565 CTNNA3Q9UI47 895 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 PNPLA7Q6ZV29 1317 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 TNS1Q9HBL0 1735 aaKnown RBP7.38□□□□□ -1.23
CLK1-210ENST00000473565 CYP2D7A0A087X1C5 515 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 PRPF40AO75400 957 aaKnown RBP7.38□□□□□ -1.23
CLK1-210ENST00000473565 UFL1O94874 794 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 SCRN1Q12765 414 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 CRY2Q49AN0 593 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 FERMT3Q86UX7 667 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 CACNA1SQ13698 1873 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 ANKRD31Q8N7Z5 1873 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 NEDD4P46934 1319 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 IRS2Q9Y4H2 1338 aa7.38□□□□□ -1.23
CLK1-210ENST00000473565 B4E1Z4 1266 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 PRC1O43663 620 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 STX6O43752 255 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 ANKRD1Q15327 319 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 SLC4A8Q2Y0W8 1093 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 TICAM2Q86XR7 235 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 GTF3C6Q969F1 213 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 NAPBQ9H115 298 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 SENP2Q9HC62 589 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 TAOK2Q9UL54 1235 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 UTRNP46939 3433 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 BAZ2AQ9UIF9 1905 aaKnown RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 NCLP19338 710 aaKnown RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 TDO2P48775 406 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 MECOMQ03112 1051 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 NAA16Q6N069 864 aaPredicted RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 FAM173BQ6P4H8 233 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 CYB5R4Q7L1T6 521 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 RALYLQ86SE5 291 aaKnown RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 MB21D2Q8IYB1 491 aaPredicted RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 PATL2C9JE40 543 aaKnown RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 RXRAP19793 462 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 RRP12Q5JTH9 1297 aaKnown RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 DEFB132Q7Z7B7 95 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 RBM17Q96I25 401 aaKnown RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 ALDH8A1Q9H2A2 487 aaPredicted RBP7.37□□□□□ -1.23
CLK1-210ENST00000473565 LMBRD1Q9NUN5 540 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 BRPF3Q9ULD4 1205 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 MTMR6Q9Y217 621 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 XDHP47989 1333 aa7.37□□□□□ -1.23
CLK1-210ENST00000473565 MAGEB6P1A0A0J9YX57 407 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 MINDY4BA8MYZ0 360 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 ZSCAN22P10073 491 aaPredicted RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 LARP1BQ659C4 914 aaKnown RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 CLEC17AQ6ZS10 378 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 CDC37L1Q7L3B6 337 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 NCOA7Q8NI08 942 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 NSUN4Q96CB9 384 aaKnown RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 TOMM22Q9NS69 142 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 AATFQ9NY61 560 aaKnown RBP eCLIP7.36□□□□□ -1.23
CLK1-210ENST00000473565 ZNF219Q9P2Y4 722 aaPredicted RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 POLLQ9UGP5 575 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 WDR33Q9C0J8 1336 aaKnown RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 GOLGA6L22H0YM25 854 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 C6orf229H3BNL8 230 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 RIMBP2O15034 1052 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 KDM4AO75164 1064 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 CTDNEP1O95476 244 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 HMGB1P09429 215 aaKnown RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 DIXDC1Q155Q3 683 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 NLGN1Q8N2Q7 840 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 ZKSCAN3Q9BRR0 538 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 RIOK1Q9BRS2 568 aaKnown RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 CNPY2Q9Y2B0 182 aa7.36□□□□□ -1.23
CLK1-210ENST00000473565 DDX49Q9Y6V7 483 aaKnown RBP7.36□□□□□ -1.23
CLK1-210ENST00000473565 SRCAPQ6ZRS2 3230 aa7.35□□□□□ -1.23
CLK1-210ENST00000473565 KLF18A0A0U1RQI7 1052 aa7.35□□□□□ -1.23
CLK1-210ENST00000473565 PDIA3P30101 505 aaKnown RBP7.35□□□□□ -1.23
CLK1-210ENST00000473565 MCM5P33992 734 aa7.35□□□□□ -1.23
CLK1-210ENST00000473565 CCDC144CPQ8IYA2 1237 aa7.35□□□□□ -1.23
CLK1-210ENST00000473565 RBM27Q9P2N5 1060 aaKnown RBP7.35□□□□□ -1.23
CLK1-210ENST00000473565 CHD4Q14839 1912 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms